Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.47■□□□□ 0.23
COL12A1Q99715 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.47■□□□□ 0.23
COL12A1Q99715 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.47■□□□□ 0.23
COL12A1Q99715 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.47■□□□□ 0.23
COL12A1Q99715 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.47■□□□□ 0.23
COL12A1Q99715 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.47■□□□□ 0.23
COL12A1Q99715 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
COL12A1Q99715 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 AC026310.3-201ENST00000625186 2373 ntBASIC16.47■□□□□ 0.23
COL12A1Q99715 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
COL12A1Q99715 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL12A1Q99715 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.47■□□□□ 0.23
COL12A1Q99715 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.47■□□□□ 0.23
COL12A1Q99715 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL12A1Q99715 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
COL12A1Q99715 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
COL12A1Q99715 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.46■□□□□ 0.23
COL12A1Q99715 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL12A1Q99715 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.46■□□□□ 0.23
COL12A1Q99715 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL12A1Q99715 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL12A1Q99715 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
COL12A1Q99715 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
COL12A1Q99715 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.46■□□□□ 0.23
COL12A1Q99715 AL136038.4-201ENST00000603606 1261 ntBASIC16.46■□□□□ 0.23
COL12A1Q99715 AL096865.1-201ENST00000606796 927 ntBASIC16.46■□□□□ 0.23
COL12A1Q99715 MIR1199-201ENST00000621445 119 ntBASIC16.46■□□□□ 0.23
COL12A1Q99715 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
COL12A1Q99715 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL12A1Q99715 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
COL12A1Q99715 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL12A1Q99715 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
COL12A1Q99715 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.46■□□□□ 0.23
COL12A1Q99715 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL12A1Q99715 KRT18P3-201ENST00000451602 1288 ntBASIC16.46■□□□□ 0.23
COL12A1Q99715 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.46■□□□□ 0.23
COL12A1Q99715 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.46■□□□□ 0.23
COL12A1Q99715 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL12A1Q99715 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
COL12A1Q99715 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL12A1Q99715 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL12A1Q99715 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
COL12A1Q99715 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL12A1Q99715 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL12A1Q99715 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.45■□□□□ 0.22
COL12A1Q99715 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 AC190387.1-201ENST00000551683 408 ntBASIC16.45■□□□□ 0.22
COL12A1Q99715 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.45■□□□□ 0.22
COL12A1Q99715 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL12A1Q99715 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL12A1Q99715 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.45■□□□□ 0.22
COL12A1Q99715 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL12A1Q99715 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL12A1Q99715 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL12A1Q99715 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL12A1Q99715 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 AC096582.2-201ENST00000510860 516 ntBASIC16.45■□□□□ 0.22
COL12A1Q99715 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 AL592071.1-201ENST00000611956 408 ntBASIC16.45■□□□□ 0.22
COL12A1Q99715 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
COL12A1Q99715 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
COL12A1Q99715 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC16.45■□□□□ 0.22
COL12A1Q99715 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL12A1Q99715 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.44■□□□□ 0.22
COL12A1Q99715 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.44■□□□□ 0.22
COL12A1Q99715 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
COL12A1Q99715 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.44■□□□□ 0.22
COL12A1Q99715 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.44■□□□□ 0.22
COL12A1Q99715 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.44■□□□□ 0.22
COL12A1Q99715 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.44■□□□□ 0.22
COL12A1Q99715 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.44■□□□□ 0.22
COL12A1Q99715 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.44■□□□□ 0.22
COL12A1Q99715 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
COL12A1Q99715 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.44■□□□□ 0.22
COL12A1Q99715 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms