Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 RNPS1P1-201ENST00000507437 918 ntBASIC13.11□□□□□ -0.31
CSMD3Q7Z407 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 Z69720.1-201ENST00000601483 472 ntBASIC13.11□□□□□ -0.31
CSMD3Q7Z407 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 AL023284.2-201ENST00000405850 579 ntBASIC13.11□□□□□ -0.31
CSMD3Q7Z407 AC064862.7-201ENST00000604520 867 ntBASIC13.11□□□□□ -0.31
CSMD3Q7Z407 AL390719.2-201ENST00000606993 987 ntBASIC13.11□□□□□ -0.31
CSMD3Q7Z407 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 BNIP3P18-201ENST00000593976 575 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 RPSAP43-201ENST00000402237 625 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 AP001160.2-201ENST00000596071 487 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 AL136038.4-201ENST00000603606 1261 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 AL139424.1-201ENST00000607572 797 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 AL035633.1-201ENST00000406139 838 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 MIR1233-2-201ENST00000408138 82 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 MIR1233-1-201ENST00000408722 82 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 AC018712.1-201ENST00000455767 687 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 IGHV3-22-201ENST00000520721 359 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 AC009065.1-201ENST00000564055 1225 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 AP001005.1-201ENST00000571755 1248 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 TP73-AS1-207ENST00000624167 988 ntBASIC13.1□□□□□ -0.31
CSMD3Q7Z407 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC13.1□□□□□ -0.31
CSMD3Q7Z407 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 PALM-208ENST00000592155 2272 ntTSL 4 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ZNF815P-204ENST00000434898 1737 ntBASIC13.09□□□□□ -0.31
CSMD3Q7Z407 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.09□□□□□ -0.31
CSMD3Q7Z407 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms