Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.74□□□□□ -1.97
LIMD1Q9UGP4 snoU13.2-201ENST00000459201 104 ntBASIC2.74□□□□□ -1.97
LIMD1Q9UGP4 GHRLOS.1-201ENST00000610995 70 ntBASIC2.74□□□□□ -1.97
LIMD1Q9UGP4 RNY1P2-201ENST00000364820 117 ntBASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 RNU6-396P-201ENST00000365369 105 ntBASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 HSPE1P24-201ENST00000450782 238 ntBASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 RPS29P11-201ENST00000496507 171 ntBASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 RNU6-267P-201ENST00000516714 103 ntBASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 RNU6-922P-201ENST00000516753 99 ntBASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 AC025521.1-201ENST00000621624 286 ntBASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.73□□□□□ -1.97
LIMD1Q9UGP4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
LIMD1Q9UGP4 HSBP1P2-201ENST00000299671 229 ntBASIC2.72□□□□□ -1.97
LIMD1Q9UGP4 RNA5SP425-201ENST00000410336 112 ntBASIC2.72□□□□□ -1.97
LIMD1Q9UGP4 AC015712.3-201ENST00000559380 164 ntBASIC2.72□□□□□ -1.97
LIMD1Q9UGP4 MIR4666B-201ENST00000578142 81 ntBASIC2.72□□□□□ -1.97
LIMD1Q9UGP4 MIR4648-201ENST00000580107 72 ntBASIC2.72□□□□□ -1.97
LIMD1Q9UGP4 AP000753.3-201ENST00000604083 169 ntBASIC2.72□□□□□ -1.97
LIMD1Q9UGP4 MIR26A1-201ENST00000362205 77 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 RNA5SP276-201ENST00000362580 94 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 SNORA67.1-201ENST00000364749 141 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 MIR1255A-201ENST00000408338 113 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 AC244636.1-201ENST00000421152 228 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 AL161932.1-201ENST00000437408 146 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 snoU13.23-201ENST00000458863 104 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 RNU1-98P-201ENST00000458992 160 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 MIR4264-201ENST00000583520 66 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 AL773524.1-201ENST00000614065 229 ntBASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.71□□□□□ -1.98
LIMD1Q9UGP4 RNU6-633P-201ENST00000362612 103 ntBASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 RNU6-509P-201ENST00000363519 107 ntBASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 Y_RNA.609-201ENST00000410669 89 ntBASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 RNA5SP320-201ENST00000516263 124 ntBASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 RNA5SP282-201ENST00000516355 108 ntBASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 SNORA9.3-201ENST00000516383 129 ntBASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 RNU6-250P-201ENST00000516958 103 ntBASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 PRELID3BP2-201ENST00000605362 201 ntBASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 U4.3-201ENST00000621047 82 ntBASIC2.7□□□□□ -1.98
LIMD1Q9UGP4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 SNORA6-201ENST00000384033 151 ntBASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 MIR27B-201ENST00000385129 97 ntBASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 MIR1289-2-201ENST00000408360 111 ntBASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 AC244023.1-201ENST00000426884 112 ntBASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 AC015688.6-201ENST00000577737 104 ntBASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 AC242498.1-201ENST00000604134 111 ntBASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
LIMD1Q9UGP4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 MIR588-201ENST00000384900 83 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 MT-TN-201ENST00000387400 73 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 Y_RNA.611-201ENST00000410682 108 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 AL591806.2-201ENST00000433122 173 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 RN7SL499P-201ENST00000481141 276 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 MIR2115-201ENST00000516657 100 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 MIR5194-201ENST00000582634 120 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 MIR4713-201ENST00000582691 75 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 MIR3192-201ENST00000584920 77 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 MIR8074-201ENST00000615081 81 ntBASIC2.68□□□□□ -1.98
LIMD1Q9UGP4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
LIMD1Q9UGP4 MIR764-201ENST00000390811 85 ntBASIC2.67□□□□□ -1.98
LIMD1Q9UGP4 RN7SKP223-201ENST00000410582 62 ntBASIC2.67□□□□□ -1.98
LIMD1Q9UGP4 RNA5SP395-201ENST00000516567 118 ntBASIC2.67□□□□□ -1.98
LIMD1Q9UGP4 SNORA4-201ENST00000584302 138 ntBASIC2.67□□□□□ -1.98
LIMD1Q9UGP4 AL096861.1-201ENST00000610899 123 ntBASIC2.67□□□□□ -1.98
LIMD1Q9UGP4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.67□□□□□ -1.98
LIMD1Q9UGP4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
LIMD1Q9UGP4 Y_RNA.4-201ENST00000362333 112 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 Y_RNA.168-201ENST00000363740 102 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 U8.9-201ENST00000365667 134 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 Y_RNA.437-201ENST00000384113 113 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 RNU6-439P-201ENST00000384188 106 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 MIR563-201ENST00000385080 79 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 Y_RNA.607-201ENST00000410597 98 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 AC108210.2-201ENST00000503681 201 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 RNU11-2P-201ENST00000516898 142 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 AL513043.2-201ENST00000573941 143 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 MIR3605-201ENST00000583214 100 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 MIR4635-201ENST00000583759 79 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 MIR548BB-201ENST00000626714 66 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 AC006160.2-201ENST00000637708 154 ntBASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.66□□□□□ -1.98
LIMD1Q9UGP4 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.98
LIMD1Q9UGP4 SNORA2B-201ENST00000384583 137 ntBASIC2.65□□□□□ -1.99
LIMD1Q9UGP4 MIR181B2-201ENST00000385004 89 ntBASIC2.65□□□□□ -1.99
LIMD1Q9UGP4 RNA5SP225-201ENST00000410874 135 ntBASIC2.65□□□□□ -1.99
LIMD1Q9UGP4 RNA5SP445-201ENST00000515889 115 ntBASIC2.65□□□□□ -1.99
LIMD1Q9UGP4 SNORA77B-201ENST00000578179 125 ntBASIC2.65□□□□□ -1.99
LIMD1Q9UGP4 MIR4287-201ENST00000579398 78 ntBASIC2.65□□□□□ -1.99
LIMD1Q9UGP4 AP000942.3-201ENST00000603702 160 ntBASIC2.65□□□□□ -1.99
LIMD1Q9UGP4 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.65□□□□□ -1.99
LIMD1Q9UGP4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
LIMD1Q9UGP4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms