Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MIR3152-201ENST00000579801 74 ntBASIC1.13□□□□□ -2.23
SMARCAL1Q9NZC9 MIR4295-201ENST00000585286 85 ntBASIC1.13□□□□□ -2.23
SMARCAL1Q9NZC9 AC242498.1-201ENST00000604134 111 ntBASIC1.13□□□□□ -2.23
SMARCAL1Q9NZC9 Y_RNA.118-201ENST00000363300 101 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 Y_RNA.280-201ENST00000364765 112 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 Y_RNA.330-201ENST00000365230 109 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 RNU6-396P-201ENST00000365369 105 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 RNU4-61P-201ENST00000411243 107 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 POLR2J4-204ENST00000418424 324 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 AL158147.1-201ENST00000443970 75 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 TMSB4XP3-201ENST00000445144 114 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 OR2A41P-201ENST00000473586 105 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 RNU2-35P-201ENST00000516446 142 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 MIR4305-201ENST00000583252 102 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 AC021443.1-201ENST00000604478 211 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 SNORD114-21-201ENST00000606412 72 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 AL137067.1-201ENST00000615933 120 ntBASIC1.12□□□□□ -2.23
SMARCAL1Q9NZC9 SNORA22.1-201ENST00000362701 134 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 Y_RNA.171-201ENST00000363760 102 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 Y_RNA.218-201ENST00000364218 104 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 Y_RNA.224-201ENST00000364308 111 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 Y_RNA.508-201ENST00000384502 114 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 Y_RNA.525-201ENST00000384570 113 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 SNORD38B-201ENST00000384690 67 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 RNU6-205P-201ENST00000390858 107 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 RNA5SP261-201ENST00000410536 106 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 RNA5SP144-201ENST00000410846 116 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 RN7SKP19-201ENST00000516016 252 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 SNORD38B-202ENST00000625943 69 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 MIR6841-201ENST00000637129 72 ntBASIC1.11□□□□□ -2.23
SMARCAL1Q9NZC9 RNU6-647P-201ENST00000364243 107 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 MIR539-201ENST00000365690 78 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 SNORD12C-201ENST00000386307 89 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 AL512326.2-201ENST00000426359 151 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 RNU7-107P-201ENST00000459121 61 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 RNU7-164P-201ENST00000459221 62 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 RNU6-781P-201ENST00000516377 101 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 SNORA70.22-201ENST00000517160 124 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.1□□□□□ -2.23
SMARCAL1Q9NZC9 Y_RNA.430-201ENST00000384081 110 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 RNU6-959P-201ENST00000384671 107 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 MIR518E-201ENST00000385252 88 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 RNU7-123P-201ENST00000515911 60 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 SNORD79.1-201ENST00000516069 84 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 RNU7-40P-201ENST00000516397 64 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 MIR2115-201ENST00000516657 100 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 RNY4P20-201ENST00000516678 93 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 RNU11-2P-201ENST00000516898 142 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 SEPT14P17-201ENST00000617978 177 ntBASIC1.09□□□□□ -2.23
SMARCAL1Q9NZC9 AC008163.1-202ENST00000636004 2889 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 Y_RNA.71-201ENST00000362892 104 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-81P-201ENST00000365608 104 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 Y_RNA.470-201ENST00000384307 117 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-1237P-201ENST00000384777 107 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 MIR222-201ENST00000384992 110 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 MIR1263-201ENST00000408324 86 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 Y_RNA.617-201ENST00000410920 90 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 AL022718.1-201ENST00000412004 84 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 RNU7-21P-201ENST00000459430 62 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-1061P-201ENST00000516530 99 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 AC023827.1-201ENST00000569247 97 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 MIR7111-201ENST00000619751 72 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 AC132825.6-201ENST00000638861 357 ntBASIC1.08□□□□□ -2.24
SMARCAL1Q9NZC9 Y_RNA.116-201ENST00000363292 103 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 Y_RNA.298-201ENST00000364960 107 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 SNORA25-201ENST00000384384 134 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 SNORA80D-201ENST00000384488 135 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 SNORA2B-201ENST00000384583 137 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-613P-201ENST00000410412 108 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 Y_RNA.630-201ENST00000411370 108 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 AC004812.1-201ENST00000540773 146 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 AC022523.2-201ENST00000561045 150 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 AP000753.3-201ENST00000604083 169 ntBASIC1.07□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-53P-201ENST00000365367 106 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 Y_RNA.354-201ENST00000365448 111 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-80P-201ENST00000384195 107 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-342P-201ENST00000384521 104 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-1104P-201ENST00000384723 104 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 MRPL35P3-201ENST00000421557 364 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 RNU7-113P-201ENST00000459273 62 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 AC087343.1-201ENST00000477341 475 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-772P-201ENST00000516042 105 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 MIR6504-201ENST00000613520 61 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 uc_338.6-201ENST00000613544 171 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 MIR6740-201ENST00000618268 113 ntBASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SMARCAL1Q9NZC9 AL157777.2-201ENST00000258070 137 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 Y_RNA.531-201ENST00000384589 121 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 MIR588-201ENST00000384900 83 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 RNU6-893P-201ENST00000458841 100 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 snoU13.21-201ENST00000459368 105 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 snoU13.18-201ENST00000459483 104 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 AC113410.1-201ENST00000505029 247 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 RNA5SP33-201ENST00000516687 98 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 AC036111.3-201ENST00000526389 112 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 MIR4264-201ENST00000583520 66 ntBASIC1.05□□□□□ -2.24
SMARCAL1Q9NZC9 AC103810.9-201ENST00000606688 112 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 241.9 ms