Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.78□□□□□ -2.53
SCN3AQ9NY46 MIR181B2-201ENST00000385004 89 ntBASIC-0.78□□□□□ -2.53
SCN3AQ9NY46 MIR548K-201ENST00000408406 116 ntBASIC-0.78□□□□□ -2.53
SCN3AQ9NY46 MTND3P8-201ENST00000412909 339 ntBASIC-0.78□□□□□ -2.53
SCN3AQ9NY46 MTND4LP30-201ENST00000454092 297 ntBASIC-0.78□□□□□ -2.53
SCN3AQ9NY46 TRAJ51-201ENST00000504127 63 ntBASIC-0.78□□□□□ -2.53
SCN3AQ9NY46 MIR5688-201ENST00000580619 83 ntBASIC-0.78□□□□□ -2.53
SCN3AQ9NY46 SNORD113-5-201ENST00000607261 78 ntBASIC-0.78□□□□□ -2.53
SCN3AQ9NY46 AL669831.3-213ENST00000636676 183 ntBASIC-0.78□□□□□ -2.53
SCN3AQ9NY46 Y_RNA.51-201ENST00000362725 102 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.424-201ENST00000384063 103 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 SNORD63-201ENST00000384262 68 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 MTATP6P26-201ENST00000445926 662 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 MRPS35P2-201ENST00000508242 191 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 RNU7-79P-201ENST00000516082 62 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 RNU6-397P-201ENST00000516226 104 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.713-201ENST00000517013 96 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 AC245505.1-201ENST00000556398 224 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 MIR4423-201ENST00000580922 80 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.14-201ENST00000362415 103 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 SNORD114-10-201ENST00000363409 72 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 SNORD114-29-201ENST00000364819 70 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.653-201ENST00000459091 95 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 SNORD36C-201ENST00000516733 66 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.79□□□□□ -2.54
SCN3AQ9NY46 RNU6-1205P-201ENST00000363625 106 ntBASIC-0.8□□□□□ -2.54
SCN3AQ9NY46 SNORD115-44-201ENST00000365391 82 ntBASIC-0.8□□□□□ -2.54
SCN3AQ9NY46 SNORD67.1-201ENST00000516618 108 ntBASIC-0.8□□□□□ -2.54
SCN3AQ9NY46 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.8□□□□□ -2.54
SCN3AQ9NY46 RNA5SP192-201ENST00000364404 120 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RNU6-865P-201ENST00000364772 107 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RNU6-10P-201ENST00000384036 107 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.515-201ENST00000384535 112 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RNU6-455P-201ENST00000384681 107 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 SNX3P1X-201ENST00000414887 175 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RNU7-45P-201ENST00000459460 63 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RNU7-188P-201ENST00000517063 64 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 SNORD58B-201ENST00000607313 66 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 MIR6507-201ENST00000613630 70 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.9-201ENST00000362354 101 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.143-201ENST00000363520 106 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RNU4-36P-201ENST00000364294 144 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RNU6-480P-201ENST00000384332 107 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RNU7-74P-201ENST00000459104 62 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RN7SKP19-201ENST00000516016 252 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 RNU6-120P-201ENST00000516077 103 ntBASIC-0.81□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.194-201ENST00000363985 102 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 RNY3P11-201ENST00000364153 102 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 RNY3-201ENST00000365484 102 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.389-201ENST00000383924 113 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.428-201ENST00000384078 102 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 SNORD116-1-201ENST00000384335 95 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.496-201ENST00000384444 101 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 SNORD116-29-201ENST00000384516 83 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.541-201ENST00000384640 113 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 SNORD56B-201ENST00000384713 71 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 RNA5SP66-201ENST00000517178 101 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 AC097639.2-201ENST00000603159 172 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 AC011603.4-201ENST00000611325 277 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 AC138305.3-201ENST00000624988 240 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 RNY1P2-201ENST00000364820 117 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.304-201ENST00000365011 112 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.482-201ENST00000384377 111 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.592-201ENST00000410274 109 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.605-201ENST00000410577 105 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.646-201ENST00000410980 101 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 SNORA13-201ENST00000458790 133 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 RNU2-31P-201ENST00000516954 155 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 MTND5P40-201ENST00000559945 246 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 MIR378F-201ENST00000578143 78 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 MIR4473-201ENST00000583731 91 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 AC098479.1-201ENST00000609225 154 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 WT1-AS_8.1-201ENST00000615200 275 ntBASIC-0.82□□□□□ -2.54
SCN3AQ9NY46 RNU4-90P-201ENST00000362773 141 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.88-201ENST00000363029 99 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 U8.6-201ENST00000364939 135 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 RNU6-24P-201ENST00000384440 107 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 RNU6-21P-201ENST00000384710 107 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 RNU7-113P-201ENST00000459273 62 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 MTCO2P24-201ENST00000515611 426 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 RNU7-4P-201ENST00000516961 62 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 MIR5197-201ENST00000583721 112 ntBASIC-0.83□□□□□ -2.54
SCN3AQ9NY46 RNU6-845P-201ENST00000362578 103 ntBASIC-0.84□□□□□ -2.54
SCN3AQ9NY46 RNU6-888P-201ENST00000363010 101 ntBASIC-0.84□□□□□ -2.54
SCN3AQ9NY46 RNU6-728P-201ENST00000365375 104 ntBASIC-0.84□□□□□ -2.54
SCN3AQ9NY46 SNORA53-201ENST00000391141 249 ntBASIC-0.84□□□□□ -2.54
SCN3AQ9NY46 HSPE1P25-201ENST00000455484 251 ntBASIC-0.84□□□□□ -2.54
SCN3AQ9NY46 Y_RNA.635-201ENST00000459041 101 ntBASIC-0.84□□□□□ -2.54
SCN3AQ9NY46 RNU6-175P-201ENST00000516896 107 ntBASIC-0.84□□□□□ -2.54
SCN3AQ9NY46 RNU6-1213P-201ENST00000517075 94 ntBASIC-0.84□□□□□ -2.54
SCN3AQ9NY46 AP001328.1-201ENST00000528550 176 ntBASIC-0.84□□□□□ -2.54
SCN3AQ9NY46 MIR6738-201ENST00000619620 64 ntBASIC-0.84□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 267.4 ms