Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MRPL35P3-201ENST00000421557 364 ntBASIC1.62□□□□□ -2.15
TRIM39Q9HCM9 AL591704.2-201ENST00000421658 181 ntBASIC1.62□□□□□ -2.15
TRIM39Q9HCM9 SNORD13-201ENST00000459299 104 ntBASIC1.62□□□□□ -2.15
TRIM39Q9HCM9 RPS23P4-201ENST00000487908 423 ntBASIC1.62□□□□□ -2.15
TRIM39Q9HCM9 MIR6516-201ENST00000630554 81 ntBASIC1.62□□□□□ -2.15
TRIM39Q9HCM9 SNORA80D-201ENST00000384488 135 ntBASIC1.61□□□□□ -2.15
TRIM39Q9HCM9 RNU4-69P-201ENST00000410677 143 ntBASIC1.61□□□□□ -2.15
TRIM39Q9HCM9 RNU1-98P-201ENST00000458992 160 ntBASIC1.61□□□□□ -2.15
TRIM39Q9HCM9 Y_RNA.649-201ENST00000459077 103 ntBASIC1.61□□□□□ -2.15
TRIM39Q9HCM9 RNY4P6-201ENST00000363667 96 ntBASIC1.6□□□□□ -2.15
TRIM39Q9HCM9 Y_RNA.273-201ENST00000364703 102 ntBASIC1.6□□□□□ -2.15
TRIM39Q9HCM9 RNU6-1056P-201ENST00000383996 107 ntBASIC1.6□□□□□ -2.15
TRIM39Q9HCM9 RNU6-910P-201ENST00000390844 107 ntBASIC1.6□□□□□ -2.15
TRIM39Q9HCM9 SNORA67.5-201ENST00000391036 107 ntBASIC1.6□□□□□ -2.15
TRIM39Q9HCM9 Y_RNA.629-201ENST00000411368 105 ntBASIC1.6□□□□□ -2.15
TRIM39Q9HCM9 RNU6-970P-201ENST00000516312 107 ntBASIC1.6□□□□□ -2.15
TRIM39Q9HCM9 RNU6-1258P-201ENST00000516911 111 ntBASIC1.6□□□□□ -2.15
TRIM39Q9HCM9 SNORA70.22-201ENST00000517160 124 ntBASIC1.6□□□□□ -2.15
TRIM39Q9HCM9 Y_RNA.330-201ENST00000365230 109 ntBASIC1.59□□□□□ -2.15
TRIM39Q9HCM9 SNORA18-201ENST00000384416 132 ntBASIC1.59□□□□□ -2.15
TRIM39Q9HCM9 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.59□□□□□ -2.15
TRIM39Q9HCM9 SNORD33.1-201ENST00000516213 88 ntBASIC1.59□□□□□ -2.15
TRIM39Q9HCM9 Y_RNA.353-201ENST00000365440 108 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 Y_RNA.470-201ENST00000384307 117 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 MIR222-201ENST00000384992 110 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 SNORD12C-201ENST00000386307 89 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 RNU6-1064P-201ENST00000410626 104 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 AC244023.1-201ENST00000426884 112 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 RNU7-62P-201ENST00000458856 62 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 snoU13.2-201ENST00000459201 104 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 AC022523.2-201ENST00000561045 150 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 MTND5P34-201ENST00000568888 325 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 AC242498.1-201ENST00000604134 111 ntBASIC1.58□□□□□ -2.16
TRIM39Q9HCM9 RNU6-476P-201ENST00000384726 107 ntBASIC1.57□□□□□ -2.16
TRIM39Q9HCM9 MIR588-201ENST00000384900 83 ntBASIC1.57□□□□□ -2.16
TRIM39Q9HCM9 RNU6-205P-201ENST00000390858 107 ntBASIC1.57□□□□□ -2.16
TRIM39Q9HCM9 SNORD12-201ENST00000391002 90 ntBASIC1.57□□□□□ -2.16
TRIM39Q9HCM9 RNU7-6P-201ENST00000516845 62 ntBASIC1.57□□□□□ -2.16
TRIM39Q9HCM9 MIR548AE2-201ENST00000583456 67 ntBASIC1.57□□□□□ -2.16
TRIM39Q9HCM9 RNU6-1104P-201ENST00000384723 104 ntBASIC1.56□□□□□ -2.16
TRIM39Q9HCM9 RNU7-90P-201ENST00000459216 62 ntBASIC1.56□□□□□ -2.16
TRIM39Q9HCM9 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
TRIM39Q9HCM9 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
TRIM39Q9HCM9 Y_RNA.168-201ENST00000363740 102 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 SNORA32-201ENST00000384072 121 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 RNU6-1144P-201ENST00000384247 104 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 SNORA2B-201ENST00000384583 137 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 RNU6-1237P-201ENST00000384777 107 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 SNORA75.2-201ENST00000391138 150 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 SNORA75.3-201ENST00000391231 150 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 RNU6-1086P-201ENST00000410930 100 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 RPL39P25-201ENST00000449384 154 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 RNA5SP458-201ENST00000516188 119 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 SNORD53B-201ENST00000577887 78 ntBASIC1.55□□□□□ -2.16
TRIM39Q9HCM9 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 Y_RNA.140-201ENST00000363474 103 ntBASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 RNU6-654P-201ENST00000364373 107 ntBASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 SNORD113.3-201ENST00000364630 78 ntBASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 RNU6-342P-201ENST00000384521 104 ntBASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 RNU6-880P-201ENST00000384526 107 ntBASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 MIR517C-201ENST00000385103 95 ntBASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 RNU7-21P-201ENST00000459430 62 ntBASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 SNORD79.1-201ENST00000516069 84 ntBASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.54□□□□□ -2.16
TRIM39Q9HCM9 RNU6-1290P-201ENST00000362957 109 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 SNORD116-21-201ENST00000384507 92 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 MIR548D2-201ENST00000384955 97 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 MIR548A1-201ENST00000385041 97 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 SNORD111-201ENST00000408139 94 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 RNU6-1165P-201ENST00000410119 107 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 RNU7-35P-201ENST00000517174 62 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 AC007012.1-201ENST00000567192 175 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 BX248123.2-201ENST00000606318 124 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 AL662814.1-201ENST00000617364 121 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.53□□□□□ -2.16
TRIM39Q9HCM9 RNU6-60P-201ENST00000364792 103 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 RNU6-580P-201ENST00000365159 107 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 Y_RNA.363-201ENST00000365529 113 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 SNORA25-201ENST00000384384 134 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 MT-TF-201ENST00000387314 71 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 SNORA17.3-201ENST00000391159 129 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 RNU6-955P-201ENST00000410497 104 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 RNU6-735P-201ENST00000410612 107 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 RNU6-412P-201ENST00000516434 106 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 AC012676.2-201ENST00000619258 186 ntBASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
TRIM39Q9HCM9 SNORA67.6-201ENST00000391093 99 ntBASIC1.51□□□□□ -2.17
TRIM39Q9HCM9 RNA5SP95-201ENST00000410319 137 ntBASIC1.51□□□□□ -2.17
TRIM39Q9HCM9 RPS29P23-201ENST00000458635 123 ntBASIC1.51□□□□□ -2.17
TRIM39Q9HCM9 RNU7-79P-201ENST00000516082 62 ntBASIC1.51□□□□□ -2.17
TRIM39Q9HCM9 AC141846.1-201ENST00000568348 142 ntBASIC1.51□□□□□ -2.17
TRIM39Q9HCM9 MIR4679-2-201ENST00000578358 77 ntBASIC1.51□□□□□ -2.17
TRIM39Q9HCM9 MIR4303-201ENST00000581299 66 ntBASIC1.51□□□□□ -2.17
TRIM39Q9HCM9 FAM71BP1-201ENST00000604431 523 ntBASIC1.51□□□□□ -2.17
TRIM39Q9HCM9 MIR6740-201ENST00000618268 113 ntBASIC1.51□□□□□ -2.17
TRIM39Q9HCM9 RNU1-42P-201ENST00000364033 160 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 210.9 ms