Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 U4.1-201ENST00000620349 87 ntBASIC0.41□□□□□ -2.34
SCN2AQ99250 Y_RNA.571-201ENST00000384753 98 ntBASIC0.4□□□□□ -2.34
SCN2AQ99250 MIR563-201ENST00000385080 79 ntBASIC0.4□□□□□ -2.34
SCN2AQ99250 AC009779.6-201ENST00000603972 165 ntBASIC0.4□□□□□ -2.34
SCN2AQ99250 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.4□□□□□ -2.34
SCN2AQ99250 AL109933.3-201ENST00000619095 188 ntBASIC0.4□□□□□ -2.34
SCN2AQ99250 MIR6755-201ENST00000619993 66 ntBASIC0.4□□□□□ -2.34
SCN2AQ99250 RNU6-888P-201ENST00000363010 101 ntBASIC0.4□□□□□ -2.35
SCN2AQ99250 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.4□□□□□ -2.35
SCN2AQ99250 Y_RNA.668-201ENST00000516233 93 ntBASIC0.4□□□□□ -2.35
SCN2AQ99250 RNU6-1299P-201ENST00000516316 100 ntBASIC0.4□□□□□ -2.35
SCN2AQ99250 AC021443.1-201ENST00000604478 211 ntBASIC0.4□□□□□ -2.35
SCN2AQ99250 AC092634.7-201ENST00000621022 103 ntBASIC0.4□□□□□ -2.35
SCN2AQ99250 AC067863.3-201ENST00000624172 122 ntBASIC0.4□□□□□ -2.35
SCN2AQ99250 MIR411-201ENST00000362239 96 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 Y_RNA.274-201ENST00000364714 101 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 Y_RNA.357-201ENST00000365487 109 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 Y_RNA.416-201ENST00000384014 113 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 RNU6-643P-201ENST00000384018 107 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 Y_RNA.515-201ENST00000384535 112 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.39□□□□□ -2.35
SCN2AQ99250 SEPT7P4-201ENST00000437076 306 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 RNU6-893P-201ENST00000458841 100 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 Y_RNA.720-201ENST00000517166 92 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 AL596211.1-201ENST00000569873 2277 ntBASIC0.39□□□□□ -2.35
SCN2AQ99250 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.39□□□□□ -2.35
SCN2AQ99250 Y_RNA.75-201ENST00000362927 97 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNU6-1289P-201ENST00000384431 106 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNA5SP222-201ENST00000411039 105 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 AL157398.1-201ENST00000452981 186 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNA5SP236-201ENST00000516169 116 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNU6-561P-201ENST00000516222 102 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 SNORA62.5-201ENST00000516634 120 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNU6-349P-201ENST00000362402 107 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 SNORA1-201ENST00000384107 130 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNU6-535P-201ENST00000384722 107 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNU6-578P-201ENST00000390980 103 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNA5SP63-201ENST00000391225 112 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNU6-1165P-201ENST00000410119 107 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 Y_RNA.622-201ENST00000411091 108 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 AL512326.2-201ENST00000426359 151 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 RNU6-1023P-201ENST00000516137 106 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 Y_RNA.680-201ENST00000516441 93 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.38□□□□□ -2.35
SCN2AQ99250 AC023932.2-201ENST00000603176 175 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 AC011603.4-201ENST00000611325 277 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 AC141273.2-201ENST00000618989 130 ntBASIC0.38□□□□□ -2.35
SCN2AQ99250 AC098934.3-201ENST00000430450 190 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.37□□□□□ -2.35
SCN2AQ99250 MTND1P19-201ENST00000511780 315 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 RNU6-1194P-201ENST00000516208 104 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 RNY3P16-201ENST00000516338 101 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 Y_RNA.68-201ENST00000362881 102 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 SNORD18A-201ENST00000363753 72 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 Y_RNA.294-201ENST00000364916 102 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 RNY1P8-201ENST00000383970 114 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 Y_RNA.459-201ENST00000384251 102 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 MT-TG-201ENST00000387429 68 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 MTND2P23-201ENST00000422990 651 ntBASIC0.37□□□□□ -2.35
SCN2AQ99250 Y_RNA.121-201ENST00000363309 113 ntBASIC0.36□□□□□ -2.35
SCN2AQ99250 Y_RNA.430-201ENST00000384081 110 ntBASIC0.36□□□□□ -2.35
SCN2AQ99250 Y_RNA.542-201ENST00000384641 111 ntBASIC0.36□□□□□ -2.35
SCN2AQ99250 RNU6-1011P-201ENST00000384668 107 ntBASIC0.36□□□□□ -2.35
SCN2AQ99250 Y_RNA.626-201ENST00000411288 95 ntBASIC0.36□□□□□ -2.35
SCN2AQ99250 RNU7-156P-201ENST00000517214 74 ntBASIC0.36□□□□□ -2.35
SCN2AQ99250 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.36□□□□□ -2.35
SCN2AQ99250 uc_338.16-201ENST00000621804 95 ntBASIC0.36□□□□□ -2.35
SCN2AQ99250 AC010332.2-201ENST00000613083 1904 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 SNORA9.1-201ENST00000362412 131 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 RNU6-945P-201ENST00000383947 107 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 RNY1P6-201ENST00000384193 109 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 Y_RNA.454-201ENST00000384224 113 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 RNU6-913P-201ENST00000390913 95 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 SNORD93-201ENST00000408813 74 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.35□□□□□ -2.35
SCN2AQ99250 SNORD36C-201ENST00000516733 66 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 AP003327.1-201ENST00000529684 127 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 MTND5P32-201ENST00000560711 1802 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 Y_RNA.149-201ENST00000363558 117 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 RNY4P28-201ENST00000365281 93 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 MIR4491-201ENST00000581087 68 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 AL162730.1-201ENST00000605734 292 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 AC078938.1-201ENST00000620993 318 ntBASIC0.35□□□□□ -2.35
SCN2AQ99250 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.34□□□□□ -2.35
SCN2AQ99250 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.34□□□□□ -2.35
SCN2AQ99250 SNORD24-201ENST00000383884 75 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 Y_RNA.433-201ENST00000384089 102 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 RNU6-768P-201ENST00000384683 107 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 SNORD100-201ENST00000408573 76 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 RNA5SP237-201ENST00000410414 113 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 SNORD83.1-201ENST00000411362 77 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 RNU7-113P-201ENST00000459273 62 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 RNU6-863P-201ENST00000515989 104 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 RNU4-54P-201ENST00000516428 129 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 RNU6-135P-201ENST00000516769 101 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 MIR3128-201ENST00000581957 66 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 MIR6717-201ENST00000622747 73 ntBASIC0.34□□□□□ -2.36
SCN2AQ99250 MIR6759-201ENST00000638110 65 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms