Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 Y_RNA.299-201ENST00000364973 94 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 SNORD28B-201ENST00000390993 75 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 RNU6-733P-201ENST00000410759 104 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 AC093850.1-201ENST00000454121 251 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 snoU13.23-201ENST00000458863 104 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 AC108210.2-201ENST00000503681 201 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 RNU7-61P-201ENST00000515897 61 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 RNU6-795P-201ENST00000516323 103 ntBASIC1.93□□□□□ -2.1
CLIP3Q96DZ5 Y_RNA.155-201ENST00000363632 101 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 Y_RNA.370-201ENST00000365589 108 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 MIR526A1-201ENST00000384897 85 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 RNU6-913P-201ENST00000390913 95 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 AL445685.2-201ENST00000422551 342 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 AC004941.2-201ENST00000427009 228 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 RNU7-113P-201ENST00000459273 62 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 AC015712.3-201ENST00000559380 164 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 MIR548AE2-201ENST00000583456 67 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 MIR4777-201ENST00000583710 86 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 AC091304.10-201ENST00000641554 121 ntBASIC1.92□□□□□ -2.1
CLIP3Q96DZ5 SNORA22.1-201ENST00000362701 134 ntBASIC1.91□□□□□ -2.1
CLIP3Q96DZ5 SNORD1A-201ENST00000364968 72 ntBASIC1.91□□□□□ -2.1
CLIP3Q96DZ5 RNU6-409P-201ENST00000384114 104 ntBASIC1.91□□□□□ -2.1
CLIP3Q96DZ5 MIR452-201ENST00000385020 85 ntBASIC1.91□□□□□ -2.1
CLIP3Q96DZ5 RNU6-644P-201ENST00000391155 98 ntBASIC1.91□□□□□ -2.1
CLIP3Q96DZ5 RPS29P29-201ENST00000456396 171 ntBASIC1.91□□□□□ -2.1
CLIP3Q96DZ5 MIR4422-201ENST00000581938 83 ntBASIC1.91□□□□□ -2.1
CLIP3Q96DZ5 MIR548AR-201ENST00000582191 57 ntBASIC1.91□□□□□ -2.1
CLIP3Q96DZ5 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CLIP3Q96DZ5 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 MIR494-201ENST00000349529 81 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.10-201ENST00000362371 110 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.17-201ENST00000362433 111 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 SNORA1.2-201ENST00000365189 134 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.377-201ENST00000365644 108 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.430-201ENST00000384081 110 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 RNU6-1201P-201ENST00000384227 107 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 RNU6-616P-201ENST00000384353 107 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 MIR583-201ENST00000384846 75 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 RNU1-78P-201ENST00000391248 165 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 AC079140.2-201ENST00000506193 142 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 RNU6-295P-201ENST00000516901 104 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 RNU6-958P-201ENST00000516995 106 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 RNU6-548P-201ENST00000517083 115 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 MIR4769-201ENST00000584126 77 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 SNRPGP19-201ENST00000603826 189 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 FAM71BP1-201ENST00000604431 523 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 AL020996.3-201ENST00000606617 222 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 MIR6717-201ENST00000622747 73 ntBASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CLIP3Q96DZ5 RNA5SP160-201ENST00000364866 120 ntBASIC1.89□□□□□ -2.11
CLIP3Q96DZ5 RNU6-1134P-201ENST00000365156 101 ntBASIC1.89□□□□□ -2.11
CLIP3Q96DZ5 MIR136-201ENST00000385207 82 ntBASIC1.89□□□□□ -2.11
CLIP3Q96DZ5 MIR764-201ENST00000390811 85 ntBASIC1.89□□□□□ -2.11
CLIP3Q96DZ5 RNU7-73P-201ENST00000458743 63 ntBASIC1.89□□□□□ -2.11
CLIP3Q96DZ5 MIR5002-201ENST00000584713 97 ntBASIC1.89□□□□□ -2.11
CLIP3Q96DZ5 U7.3-201ENST00000616123 62 ntBASIC1.89□□□□□ -2.11
CLIP3Q96DZ5 RNU6-60P-201ENST00000364792 103 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 SNORA7.5-201ENST00000410672 110 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 BTF3P4-201ENST00000418852 495 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNU7-67P-201ENST00000459003 62 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 SNORD123-201ENST00000459473 70 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNU6-237P-201ENST00000515985 71 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNU6-162P-201ENST00000516228 103 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.685-201ENST00000516532 108 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNU6-1018P-201ENST00000516577 106 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNU6-638P-201ENST00000516582 104 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNA5SP33-201ENST00000516687 98 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNU7-53P-201ENST00000516705 60 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNU1-40P-201ENST00000516816 164 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNU1-97P-201ENST00000516872 164 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 MIR3122-201ENST00000577243 73 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 MIR3152-201ENST00000579801 74 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 MIR4791-201ENST00000607666 84 ntBASIC1.88□□□□□ -2.11
CLIP3Q96DZ5 RNU6-457P-201ENST00000363999 107 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 SNORA70.7-201ENST00000384159 133 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 SNORA40.18-201ENST00000391200 128 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 AL451046.2-201ENST00000403074 277 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 SUMO2P12-201ENST00000405924 140 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 AC027119.1-201ENST00000440877 241 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 AC245517.4-201ENST00000448601 281 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 RNU6-521P-201ENST00000516663 105 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 DNAJC19P9-201ENST00000555084 351 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 AC243994.1-201ENST00000618627 109 ntBASIC1.87□□□□□ -2.11
CLIP3Q96DZ5 RNU6-1313P-201ENST00000362622 102 ntBASIC1.86□□□□□ -2.11
CLIP3Q96DZ5 RNU6-1065P-201ENST00000384513 106 ntBASIC1.86□□□□□ -2.11
CLIP3Q96DZ5 U8.13-201ENST00000390842 128 ntBASIC1.86□□□□□ -2.11
CLIP3Q96DZ5 SNORD78.1-201ENST00000390866 65 ntBASIC1.86□□□□□ -2.11
CLIP3Q96DZ5 RNA5SP445-201ENST00000515889 115 ntBASIC1.86□□□□□ -2.11
CLIP3Q96DZ5 AC019176.1-201ENST00000518519 225 ntBASIC1.86□□□□□ -2.11
CLIP3Q96DZ5 MIR3937-201ENST00000580135 106 ntBASIC1.86□□□□□ -2.11
CLIP3Q96DZ5 MIR8055-201ENST00000610739 97 ntBASIC1.86□□□□□ -2.11
CLIP3Q96DZ5 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.86□□□□□ -2.11
CLIP3Q96DZ5 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.95-201ENST00000363079 95 ntBASIC1.85□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.219-201ENST00000364232 113 ntBASIC1.85□□□□□ -2.11
CLIP3Q96DZ5 Y_RNA.467-201ENST00000384297 102 ntBASIC1.85□□□□□ -2.11
CLIP3Q96DZ5 MIR653-201ENST00000385279 96 ntBASIC1.85□□□□□ -2.11
CLIP3Q96DZ5 HMGN1P33-201ENST00000432945 451 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 174.6 ms