Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.33□□□□□ -2.2
HPS3Q969F9 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.33□□□□□ -2.2
HPS3Q969F9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
HPS3Q969F9 SNORA22.1-201ENST00000362701 134 ntBASIC1.32□□□□□ -2.2
HPS3Q969F9 Y_RNA.168-201ENST00000363740 102 ntBASIC1.32□□□□□ -2.2
HPS3Q969F9 Y_RNA.420-201ENST00000384043 110 ntBASIC1.32□□□□□ -2.2
HPS3Q969F9 RNU5E-3P-201ENST00000515913 68 ntBASIC1.32□□□□□ -2.2
HPS3Q969F9 AC023827.1-201ENST00000569247 97 ntBASIC1.32□□□□□ -2.2
HPS3Q969F9 Y_RNA.757-201ENST00000578934 114 ntBASIC1.32□□□□□ -2.2
HPS3Q969F9 HSPE1P19-201ENST00000603327 295 ntBASIC1.32□□□□□ -2.2
HPS3Q969F9 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
HPS3Q969F9 RNU6-309P-201ENST00000364573 106 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 Y_RNA.506-201ENST00000384494 102 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 MIR19B1-201ENST00000384829 87 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 RNU6-205P-201ENST00000390858 107 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 AL022718.1-201ENST00000412004 84 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 AC244023.1-201ENST00000426884 112 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 RN7SKP179-201ENST00000516126 217 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 RNA5SP404-201ENST00000517118 132 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 AC036111.3-201ENST00000526389 112 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 AC133485.4-201ENST00000561835 220 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 AC138907.4-201ENST00000570107 226 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 AC242498.1-201ENST00000604134 111 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 AC106800.4-201ENST00000614905 153 ntBASIC1.31□□□□□ -2.2
HPS3Q969F9 RNA5SP95-201ENST00000410319 137 ntBASIC1.3□□□□□ -2.2
HPS3Q969F9 RNU6-426P-201ENST00000516464 97 ntBASIC1.3□□□□□ -2.2
HPS3Q969F9 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.3□□□□□ -2.2
HPS3Q969F9 RNU1-124P-201ENST00000363861 145 ntBASIC1.29□□□□□ -2.2
HPS3Q969F9 RNU6-53P-201ENST00000365367 106 ntBASIC1.29□□□□□ -2.2
HPS3Q969F9 RNU6-994P-201ENST00000410507 111 ntBASIC1.29□□□□□ -2.2
HPS3Q969F9 RNU7-62P-201ENST00000458856 62 ntBASIC1.29□□□□□ -2.2
HPS3Q969F9 RNU6-240P-201ENST00000516098 97 ntBASIC1.29□□□□□ -2.2
HPS3Q969F9 RNU6-346P-201ENST00000516288 111 ntBASIC1.29□□□□□ -2.2
HPS3Q969F9 Y_RNA.703-201ENST00000516846 111 ntBASIC1.29□□□□□ -2.2
HPS3Q969F9 RNU6-580P-201ENST00000365159 107 ntBASIC1.28□□□□□ -2.2
HPS3Q969F9 MIR200A-201ENST00000384875 90 ntBASIC1.28□□□□□ -2.2
HPS3Q969F9 RNA5SP144-201ENST00000410846 116 ntBASIC1.28□□□□□ -2.2
HPS3Q969F9 Y_RNA.651-201ENST00000459380 103 ntBASIC1.28□□□□□ -2.2
HPS3Q969F9 MIR4305-201ENST00000583252 102 ntBASIC1.28□□□□□ -2.2
HPS3Q969F9 U7.2-201ENST00000607576 63 ntBASIC1.28□□□□□ -2.2
HPS3Q969F9 TUG1_4.1-201ENST00000619464 181 ntBASIC1.28□□□□□ -2.2
HPS3Q969F9 MIR6841-201ENST00000637129 72 ntBASIC1.28□□□□□ -2.2
HPS3Q969F9 AC010332.2-201ENST00000613083 1904 ntBASIC1.28□□□□□ -2.2
HPS3Q969F9 SNORD114-22-201ENST00000365423 72 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 RNU6-746P-201ENST00000384112 109 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 MIR588-201ENST00000384900 83 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 MIR613-201ENST00000385248 95 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 SNORD12C-201ENST00000386307 89 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 AC067940.1-201ENST00000458411 300 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 snoU13.2-201ENST00000459201 104 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 MIR3121-201ENST00000579680 77 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 AC021443.1-201ENST00000604478 211 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 RMST_2.1-201ENST00000617263 136 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 AC012676.2-201ENST00000619258 186 ntBASIC1.27□□□□□ -2.21
HPS3Q969F9 Y_RNA.568-201ENST00000384742 113 ntBASIC1.26□□□□□ -2.21
HPS3Q969F9 SNORA40-201ENST00000388090 126 ntBASIC1.26□□□□□ -2.21
HPS3Q969F9 RNA5SP237-201ENST00000410414 113 ntBASIC1.26□□□□□ -2.21
HPS3Q969F9 POLR2J4-204ENST00000418424 324 ntBASIC1.26□□□□□ -2.21
HPS3Q969F9 FABP5P4-201ENST00000437203 171 ntBASIC1.26□□□□□ -2.21
HPS3Q969F9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.26□□□□□ -2.21
HPS3Q969F9 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.25□□□□□ -2.21
HPS3Q969F9 RNU6-508P-201ENST00000363231 103 ntBASIC1.25□□□□□ -2.21
HPS3Q969F9 MIR548M-201ENST00000408260 86 ntBASIC1.25□□□□□ -2.21
HPS3Q969F9 RNU7-113P-201ENST00000459273 62 ntBASIC1.25□□□□□ -2.21
HPS3Q969F9 RPS23P4-201ENST00000487908 423 ntBASIC1.25□□□□□ -2.21
HPS3Q969F9 MIR3133-201ENST00000583157 78 ntBASIC1.25□□□□□ -2.21
HPS3Q969F9 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.25□□□□□ -2.21
HPS3Q969F9 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
HPS3Q969F9 RNU6-647P-201ENST00000364243 107 ntBASIC1.24□□□□□ -2.21
HPS3Q969F9 SNORD114-24-201ENST00000365029 72 ntBASIC1.24□□□□□ -2.21
HPS3Q969F9 MIR942-201ENST00000401111 86 ntBASIC1.24□□□□□ -2.21
HPS3Q969F9 RNA5SP272-201ENST00000516095 111 ntBASIC1.24□□□□□ -2.21
HPS3Q969F9 AL137067.1-201ENST00000615933 120 ntBASIC1.24□□□□□ -2.21
HPS3Q969F9 MIR1285-1-201ENST00000408593 84 ntBASIC1.23□□□□□ -2.21
HPS3Q969F9 RNU6-1165P-201ENST00000410119 107 ntBASIC1.23□□□□□ -2.21
HPS3Q969F9 MIR18B-201ENST00000454574 71 ntBASIC1.23□□□□□ -2.21
HPS3Q969F9 RNU7-164P-201ENST00000459221 62 ntBASIC1.23□□□□□ -2.21
HPS3Q969F9 AC113410.1-201ENST00000505029 247 ntBASIC1.23□□□□□ -2.21
HPS3Q969F9 RNU6-94P-201ENST00000607728 107 ntBASIC1.23□□□□□ -2.21
HPS3Q969F9 MIR6740-201ENST00000618268 113 ntBASIC1.23□□□□□ -2.21
HPS3Q969F9 RNU6-774P-201ENST00000363238 107 ntBASIC1.22□□□□□ -2.21
HPS3Q969F9 Y_RNA.114-201ENST00000363265 113 ntBASIC1.22□□□□□ -2.21
HPS3Q969F9 Y_RNA.366-201ENST00000365540 102 ntBASIC1.22□□□□□ -2.21
HPS3Q969F9 RNU6-1237P-201ENST00000384777 107 ntBASIC1.22□□□□□ -2.21
HPS3Q969F9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.22□□□□□ -2.21
HPS3Q969F9 RPS29P28-201ENST00000446439 141 ntBASIC1.22□□□□□ -2.21
HPS3Q969F9 SNORD124-201ENST00000459577 104 ntBASIC1.22□□□□□ -2.21
HPS3Q969F9 AL136317.1-201ENST00000612653 226 ntBASIC1.22□□□□□ -2.21
HPS3Q969F9 Y_RNA.171-201ENST00000363760 102 ntBASIC1.21□□□□□ -2.22
HPS3Q969F9 RNU6-934P-201ENST00000365154 107 ntBASIC1.21□□□□□ -2.22
HPS3Q969F9 MTND4LP9-201ENST00000427694 174 ntBASIC1.21□□□□□ -2.22
HPS3Q969F9 RPL39P25-201ENST00000449384 154 ntBASIC1.21□□□□□ -2.22
HPS3Q969F9 MIR1-1-201ENST00000362147 71 ntBASIC1.2□□□□□ -2.22
HPS3Q969F9 SNORD50.2-201ENST00000365465 70 ntBASIC1.2□□□□□ -2.22
HPS3Q969F9 MIR539-201ENST00000365690 78 ntBASIC1.2□□□□□ -2.22
HPS3Q969F9 MIR7-2-201ENST00000384970 110 ntBASIC1.2□□□□□ -2.22
HPS3Q969F9 MIR563-201ENST00000385080 79 ntBASIC1.2□□□□□ -2.22
HPS3Q969F9 MT-TF-201ENST00000387314 71 ntBASIC1.2□□□□□ -2.22
HPS3Q969F9 RNA5SP33-201ENST00000516687 98 ntBASIC1.2□□□□□ -2.22
HPS3Q969F9 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 229.5 ms