Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SUB1P4-201ENST00000566062 339 ntBASIC1.97□□□□□ -2.09
USP39Q53GS9 AC022254.1-201ENST00000567857 235 ntBASIC1.97□□□□□ -2.09
USP39Q53GS9 AC021506.2-201ENST00000612354 169 ntBASIC1.97□□□□□ -2.09
USP39Q53GS9 MIR6717-201ENST00000622747 73 ntBASIC1.97□□□□□ -2.09
USP39Q53GS9 Y_RNA.219-201ENST00000364232 113 ntBASIC1.96□□□□□ -2.1
USP39Q53GS9 RNU6-60P-201ENST00000364792 103 ntBASIC1.96□□□□□ -2.1
USP39Q53GS9 RNU6-1201P-201ENST00000384227 107 ntBASIC1.96□□□□□ -2.1
USP39Q53GS9 MIR136-201ENST00000385207 82 ntBASIC1.96□□□□□ -2.1
USP39Q53GS9 AL451046.2-201ENST00000403074 277 ntBASIC1.96□□□□□ -2.1
USP39Q53GS9 BTF3P4-201ENST00000418852 495 ntBASIC1.96□□□□□ -2.1
USP39Q53GS9 RNU6-1018P-201ENST00000516577 106 ntBASIC1.96□□□□□ -2.1
USP39Q53GS9 AL020996.3-201ENST00000606617 222 ntBASIC1.96□□□□□ -2.1
USP39Q53GS9 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
USP39Q53GS9 RNU6-112P-201ENST00000363599 104 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 SNORD78.1-201ENST00000390866 65 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 SNORA48.1-201ENST00000390879 135 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 RNA5SP465-201ENST00000391195 109 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 RNA5SP212-201ENST00000391223 107 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 RNU7-73P-201ENST00000458743 63 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 RNU7-67P-201ENST00000459003 62 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 SNORD123-201ENST00000459473 70 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 RNU6-521P-201ENST00000516663 105 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.95□□□□□ -2.1
USP39Q53GS9 MIR3152-201ENST00000579801 74 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 MIR4448-201ENST00000584360 86 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 MIR4791-201ENST00000607666 84 ntBASIC1.95□□□□□ -2.1
USP39Q53GS9 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
USP39Q53GS9 Y_RNA.95-201ENST00000363079 95 ntBASIC1.94□□□□□ -2.1
USP39Q53GS9 Y_RNA.190-201ENST00000363964 101 ntBASIC1.94□□□□□ -2.1
USP39Q53GS9 SNORA70.7-201ENST00000384159 133 ntBASIC1.94□□□□□ -2.1
USP39Q53GS9 MIR520A-201ENST00000384862 85 ntBASIC1.94□□□□□ -2.1
USP39Q53GS9 RNU7-34P-201ENST00000459394 64 ntBASIC1.94□□□□□ -2.1
USP39Q53GS9 SNORA25.15-201ENST00000516487 89 ntBASIC1.94□□□□□ -2.1
USP39Q53GS9 RNU7-53P-201ENST00000516705 60 ntBASIC1.94□□□□□ -2.1
USP39Q53GS9 DNAJC19P9-201ENST00000555084 351 ntBASIC1.94□□□□□ -2.1
USP39Q53GS9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.94□□□□□ -2.1
USP39Q53GS9 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.94□□□□□ -2.1
USP39Q53GS9 MIR378A-201ENST00000362177 66 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 RNU6-1313P-201ENST00000362622 102 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 RNU6-228P-201ENST00000362700 106 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 Y_RNA.467-201ENST00000384297 102 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
USP39Q53GS9 RNA5SP501-201ENST00000410990 112 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 MRPL35P3-201ENST00000421557 364 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 HMGN1P33-201ENST00000432945 451 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 RNA5SP395-201ENST00000516567 118 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 MIR5089-201ENST00000580047 84 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 MIR4781-201ENST00000585250 76 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 snoU13.31-201ENST00000607291 104 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 AC243994.1-201ENST00000618627 109 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 AL513423.1-201ENST00000621695 132 ntBASIC1.93□□□□□ -2.1
USP39Q53GS9 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
USP39Q53GS9 Y_RNA.73-201ENST00000362910 113 ntBASIC1.92□□□□□ -2.1
USP39Q53GS9 SNORD45B-201ENST00000364617 72 ntBASIC1.92□□□□□ -2.1
USP39Q53GS9 RNU6-675P-201ENST00000384236 104 ntBASIC1.92□□□□□ -2.1
USP39Q53GS9 SNORA18-201ENST00000384416 132 ntBASIC1.92□□□□□ -2.1
USP39Q53GS9 MIR660-201ENST00000385235 97 ntBASIC1.92□□□□□ -2.1
USP39Q53GS9 SNORD77B-201ENST00000391112 67 ntBASIC1.92□□□□□ -2.1
USP39Q53GS9 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.92□□□□□ -2.1
USP39Q53GS9 AC022137.1-201ENST00000483735 151 ntBASIC1.92□□□□□ -2.1
USP39Q53GS9 MIR8055-201ENST00000610739 97 ntBASIC1.92□□□□□ -2.1
USP39Q53GS9 Y_RNA.247-201ENST00000364500 92 ntBASIC1.91□□□□□ -2.1
USP39Q53GS9 RNA5SP190-201ENST00000365222 118 ntBASIC1.91□□□□□ -2.1
USP39Q53GS9 SNORA32-201ENST00000384072 121 ntBASIC1.91□□□□□ -2.1
USP39Q53GS9 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
USP39Q53GS9 RNU6-1307P-201ENST00000391012 103 ntBASIC1.91□□□□□ -2.1
USP39Q53GS9 RNA5SP489-201ENST00000410986 109 ntBASIC1.91□□□□□ -2.1
USP39Q53GS9 UBL5P1-201ENST00000507979 193 ntBASIC1.91□□□□□ -2.1
USP39Q53GS9 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
USP39Q53GS9 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.9□□□□□ -2.1
USP39Q53GS9 MIR337-201ENST00000362281 93 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 Y_RNA.226-201ENST00000364337 114 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 RNY1P1-201ENST00000364372 112 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 SNORD115-35-201ENST00000365122 82 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 RNU6-787P-201ENST00000384032 107 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 Y_RNA.537-201ENST00000384626 109 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 RNA5SP261-201ENST00000410536 106 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 AC109327.2-201ENST00000448339 378 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 snoU13.27-201ENST00000459278 104 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 Y_RNA.659-201ENST00000515994 113 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 RNA5SP364-201ENST00000516938 78 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 RNU6-1006P-201ENST00000516998 103 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 MIR4709-201ENST00000577272 72 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 MIR4713-201ENST00000582691 75 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 MIR3935-201ENST00000583472 104 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 U1.36-201ENST00000620684 176 ntBASIC1.9□□□□□ -2.11
USP39Q53GS9 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.9□□□□□ -2.11
USP39Q53GS9 RNU6-457P-201ENST00000363999 107 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 RNU6-219P-201ENST00000364728 107 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 RNU6-1124P-201ENST00000384169 107 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 RNU6-342P-201ENST00000384521 104 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 SNORA17.3-201ENST00000391159 129 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 RNU6-887P-201ENST00000410660 100 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 RNU6-402P-201ENST00000410678 103 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 RNA5SP225-201ENST00000410874 135 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.89□□□□□ -2.11
USP39Q53GS9 RNU6-267P-201ENST00000516714 103 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 Y_RNA.705-201ENST00000516862 110 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.89□□□□□ -2.11
USP39Q53GS9 IGLL4P-201ENST00000614590 133 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 180.9 ms