Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC113410.1-201ENST00000505029 247 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 MIR3664-201ENST00000579074 99 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 AP000942.3-201ENST00000603702 160 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 AC087741.2-201ENST00000619415 172 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 MIR8065-201ENST00000620577 100 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.45□□□□□ -2.18
HOXA4Q00056 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
HOXA4Q00056 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
HOXA4Q00056 SNORD33-201ENST00000362761 85 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 Y_RNA.323-201ENST00000365157 109 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 RNU6-32P-201ENST00000383948 107 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 RNU6-756P-201ENST00000383997 107 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 RNU6-13P-201ENST00000384248 107 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 RNU6-12P-201ENST00000384604 107 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 RNU6-41P-201ENST00000384741 107 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 MIR548D2-201ENST00000384955 97 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 RNU1-78P-201ENST00000391248 165 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.44□□□□□ -2.18
HOXA4Q00056 SNORD13-201ENST00000459299 104 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 AL133373.1-201ENST00000497098 94 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 RNA5SP182-201ENST00000516064 82 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 RNU6-165P-201ENST00000517170 99 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 MIR3163-201ENST00000581592 73 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 MIR548AE2-201ENST00000583456 67 ntBASIC1.44□□□□□ -2.18
HOXA4Q00056 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
HOXA4Q00056 SNORA51.5-201ENST00000384126 131 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 RNU4-69P-201ENST00000410677 143 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.43□□□□□ -2.18
HOXA4Q00056 AC244023.1-201ENST00000426884 112 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 AC008834.1-201ENST00000511612 175 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 CYP3A52P-201ENST00000563326 91 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 AC024614.2-201ENST00000577584 372 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 MIR3618-201ENST00000580330 88 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 MIR548Z-201ENST00000584743 97 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 AC242498.1-201ENST00000604134 111 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 RNU6-94P-201ENST00000607728 107 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 AP001318.4-201ENST00000616637 121 ntBASIC1.43□□□□□ -2.18
HOXA4Q00056 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
HOXA4Q00056 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
HOXA4Q00056 ZNF355P-201ENST00000427301 3216 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 RNU6-766P-201ENST00000362478 107 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 RNA5SP48-201ENST00000363969 126 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 RNA5SP363-201ENST00000365072 115 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 SNORA32-201ENST00000384072 121 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 RNU6-1065P-201ENST00000384513 106 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 RNU6-342P-201ENST00000384521 104 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 SNORD38B-201ENST00000384690 67 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 RNU6-1307P-201ENST00000391012 103 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 SNORA17.3-201ENST00000391159 129 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 RNY4P30-201ENST00000410216 95 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 AC245047.7-201ENST00000440265 293 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.42□□□□□ -2.18
HOXA4Q00056 Y_RNA.677-201ENST00000516401 85 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 AC068339.1-201ENST00000526965 141 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 AP003716.2-201ENST00000528260 108 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 AL512310.8-201ENST00000550183 120 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 MIR5009-201ENST00000578736 100 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 SNORD38B-202ENST00000625943 69 ntBASIC1.42□□□□□ -2.18
HOXA4Q00056 RNU1-17P-201ENST00000363022 152 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 RNU6-1131P-201ENST00000364955 107 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 RNA5SP190-201ENST00000365222 118 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 Y_RNA.354-201ENST00000365448 111 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 RNY1P7-201ENST00000384743 110 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 SNORA26.9-201ENST00000391322 122 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 RPS27P16-201ENST00000425758 201 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 RPL39P39-201ENST00000455840 151 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 SNORA25.15-201ENST00000516487 89 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 AC141557.1-201ENST00000540982 400 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 MIR3122-201ENST00000577243 73 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.41□□□□□ -2.18
HOXA4Q00056 Y_RNA.299-201ENST00000364973 94 ntBASIC1.4□□□□□ -2.19
HOXA4Q00056 Y_RNA.309-201ENST00000365046 111 ntBASIC1.4□□□□□ -2.19
HOXA4Q00056 RNU6-1237P-201ENST00000384777 107 ntBASIC1.4□□□□□ -2.19
HOXA4Q00056 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
HOXA4Q00056 MIR1185-1-201ENST00000408598 86 ntBASIC1.4□□□□□ -2.19
HOXA4Q00056 RPL31P63-201ENST00000422565 375 ntBASIC1.4□□□□□ -2.19
HOXA4Q00056 AL589743.1-201ENST00000551932 2712 ntBASIC1.4□□□□□ -2.19
HOXA4Q00056 RNA5SP264-201ENST00000363115 107 ntBASIC1.39□□□□□ -2.19
HOXA4Q00056 SNORA18-201ENST00000384416 132 ntBASIC1.39□□□□□ -2.19
HOXA4Q00056 MIR605-201ENST00000385078 83 ntBASIC1.39□□□□□ -2.19
HOXA4Q00056 MIR1323-201ENST00000408090 73 ntBASIC1.39□□□□□ -2.19
HOXA4Q00056 RPL30P7-201ENST00000479312 323 ntBASIC1.39□□□□□ -2.19
HOXA4Q00056 RNU6-412P-201ENST00000516434 106 ntBASIC1.39□□□□□ -2.19
HOXA4Q00056 RNU6-548P-201ENST00000517083 115 ntBASIC1.39□□□□□ -2.19
HOXA4Q00056 AC091304.10-201ENST00000641554 121 ntBASIC1.39□□□□□ -2.19
HOXA4Q00056 RNU6-396P-201ENST00000365369 105 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 RNU6-616P-201ENST00000384353 107 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 RNU6-816P-201ENST00000390914 107 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 RNU6-1268P-201ENST00000391214 107 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 RNU6-1239P-201ENST00000391310 107 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 RNU6-904P-201ENST00000516206 101 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 RNU6-762P-201ENST00000517107 102 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 AC015712.3-201ENST00000559380 164 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 MIR4422-201ENST00000581938 83 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 MIR3124-201ENST00000582636 67 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 MIR6516-201ENST00000630554 81 ntBASIC1.38□□□□□ -2.19
HOXA4Q00056 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms