Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-291P-201ENST00000384720 107 ntBASIC-0.08□□□□□ -2.42
FOXA1P55317 RNU6-127P-201ENST00000390897 107 ntBASIC-0.08□□□□□ -2.42
FOXA1P55317 RNU6-1228P-201ENST00000391014 107 ntBASIC-0.08□□□□□ -2.42
FOXA1P55317 RNU6-1203P-201ENST00000410703 110 ntBASIC-0.08□□□□□ -2.42
FOXA1P55317 RNU7-80P-201ENST00000459562 61 ntBASIC-0.08□□□□□ -2.42
FOXA1P55317 MIR4290-201ENST00000583807 95 ntBASIC-0.08□□□□□ -2.42
FOXA1P55317 RNU5E-4P-201ENST00000364931 120 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 RNY3P5-201ENST00000384127 102 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 RNU6-1289P-201ENST00000384431 106 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 RNU6-535P-201ENST00000384722 107 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 MIR643-201ENST00000385267 97 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 MIR760-201ENST00000390220 80 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 MIR1912-201ENST00000410389 80 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 SERF1AP1-201ENST00000514575 187 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 RNA5SP476-201ENST00000516613 103 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 MTND5P34-201ENST00000568888 325 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 MIR3152-201ENST00000579801 74 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 MIR3129-201ENST00000581095 76 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 MIR548S-201ENST00000581352 82 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 MIR5197-201ENST00000583721 112 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 Y_RNA.804-201ENST00000615262 101 ntBASIC-0.09□□□□□ -2.42
FOXA1P55317 Y_RNA.28-201ENST00000362554 111 ntBASIC-0.1□□□□□ -2.43
FOXA1P55317 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.1□□□□□ -2.43
FOXA1P55317 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.1□□□□□ -2.43
FOXA1P55317 RNU6-949P-201ENST00000384040 107 ntBASIC-0.1□□□□□ -2.43
FOXA1P55317 AL606845.1-201ENST00000404881 255 ntBASIC-0.1□□□□□ -2.43
FOXA1P55317 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.1□□□□□ -2.43
FOXA1P55317 RNU6-453P-201ENST00000516819 85 ntBASIC-0.1□□□□□ -2.43
FOXA1P55317 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.1□□□□□ -2.43
FOXA1P55317 MIR4639-201ENST00000584938 69 ntBASIC-0.1□□□□□ -2.43
FOXA1P55317 DLEU2_5.2-201ENST00000610606 84 ntBASIC-0.1□□□□□ -2.43
FOXA1P55317 MIR6841-201ENST00000637129 72 ntBASIC-0.1□□□□□ -2.43
FOXA1P55317 SNORA22.1-201ENST00000362701 134 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 Y_RNA.64-201ENST00000362845 102 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 Y_RNA.117-201ENST00000363294 101 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 Y_RNA.210-201ENST00000364161 110 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 snoU2_19.4-201ENST00000364329 80 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 Y_RNA.275-201ENST00000364726 110 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 Y_RNA.276-201ENST00000364732 109 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 RNU6V-201ENST00000384105 107 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 Y_RNA.542-201ENST00000384641 111 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 SNORA20-201ENST00000384662 132 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 MT-TD-201ENST00000387419 68 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 RNU6-848P-201ENST00000515948 107 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 RNU6-617P-201ENST00000516147 107 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 RNU6-473P-201ENST00000516164 107 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 SNORA25.16-201ENST00000516741 121 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 SCARNA24.2-201ENST00000516968 130 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 MIR4802-201ENST00000581881 80 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 MIR4636-201ENST00000582271 80 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.11□□□□□ -2.43
FOXA1P55317 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 AC244669.1-204ENST00000621564 178 ntBASIC-0.11□□□□□ -2.43
FOXA1P55317 Y_RNA.84-201ENST00000363011 104 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 RNA5SP128-201ENST00000365305 116 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 Y_RNA.431-201ENST00000384086 102 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 RNU6-474P-201ENST00000384243 107 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 SNORA18-201ENST00000384416 132 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 MIR593-201ENST00000384856 100 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 MIR145-201ENST00000384967 88 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 MIR616-201ENST00000385293 97 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 Y_RNA.618-201ENST00000410949 107 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-0.12□□□□□ -2.43
FOXA1P55317 MTND5P22-201ENST00000458380 195 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 RNU6-1338P-201ENST00000516328 91 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 MIR5589-201ENST00000579442 60 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 MIR4752-201ENST00000579672 72 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 AC021613.1-201ENST00000623880 111 ntBASIC-0.12□□□□□ -2.43
FOXA1P55317 RNY1P13-201ENST00000365030 105 ntBASIC-0.13□□□□□ -2.43
FOXA1P55317 RNY3P14-201ENST00000384309 102 ntBASIC-0.13□□□□□ -2.43
FOXA1P55317 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-0.13□□□□□ -2.43
FOXA1P55317 RPL39P34-201ENST00000477141 156 ntBASIC-0.13□□□□□ -2.43
FOXA1P55317 RNU6-1143P-201ENST00000516125 104 ntBASIC-0.13□□□□□ -2.43
FOXA1P55317 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.13□□□□□ -2.43
FOXA1P55317 RNU6-988P-201ENST00000519081 107 ntBASIC-0.13□□□□□ -2.43
FOXA1P55317 MIR499B-201ENST00000636498 73 ntBASIC-0.13□□□□□ -2.43
FOXA1P55317 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-0.14□□□□□ -2.43
FOXA1P55317 RNU6-1292P-201ENST00000383856 107 ntBASIC-0.14□□□□□ -2.43
FOXA1P55317 SNORA2A-201ENST00000383885 135 ntBASIC-0.14□□□□□ -2.43
FOXA1P55317 Y_RNA.455-201ENST00000384230 98 ntBASIC-0.14□□□□□ -2.43
FOXA1P55317 Y_RNA.527-201ENST00000384573 102 ntBASIC-0.14□□□□□ -2.43
FOXA1P55317 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.14□□□□□ -2.43
FOXA1P55317 AC082651.2-201ENST00000496833 166 ntBASIC-0.14□□□□□ -2.43
FOXA1P55317 RNU6-561P-201ENST00000516222 102 ntBASIC-0.14□□□□□ -2.43
FOXA1P55317 AC141557.1-201ENST00000540982 400 ntBASIC-0.14□□□□□ -2.43
FOXA1P55317 AC113195.1-201ENST00000579952 141 ntBASIC-0.14□□□□□ -2.43
FOXA1P55317 Y_RNA.44-201ENST00000362676 108 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 Y_RNA.176-201ENST00000363815 109 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 RNA5SP245-201ENST00000364239 121 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 MIR548H2-201ENST00000408874 88 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 RNU6-651P-201ENST00000411040 105 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 SNORD2.1-201ENST00000458762 69 ntBASIC-0.15□□□□□ -2.43
FOXA1P55317 RNU6-1194P-201ENST00000516208 104 ntBASIC-0.15□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms