Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNU5E-4P-201ENST00000364931 120 ntBASIC0.14□□□□□ -2.39
BDNFP23560 RNU6-867P-201ENST00000364956 107 ntBASIC0.14□□□□□ -2.39
BDNFP23560 Y_RNA.476-201ENST00000384347 108 ntBASIC0.14□□□□□ -2.39
BDNFP23560 Y_RNA.618-201ENST00000410949 107 ntBASIC0.14□□□□□ -2.39
BDNFP23560 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.14□□□□□ -2.39
BDNFP23560 RNU7-45P-201ENST00000459460 63 ntBASIC0.14□□□□□ -2.39
BDNFP23560 RNU6-453P-201ENST00000516819 85 ntBASIC0.14□□□□□ -2.39
BDNFP23560 RNU6-570P-201ENST00000517051 105 ntBASIC0.14□□□□□ -2.39
BDNFP23560 AC112693.2-201ENST00000556538 232 ntBASIC0.14□□□□□ -2.39
BDNFP23560 AC133485.4-201ENST00000561835 220 ntBASIC0.14□□□□□ -2.39
BDNFP23560 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.14□□□□□ -2.39
BDNFP23560 MIR5197-201ENST00000583721 112 ntBASIC0.14□□□□□ -2.39
BDNFP23560 MIR8066-201ENST00000617280 78 ntBASIC0.14□□□□□ -2.39
BDNFP23560 AC078938.1-201ENST00000620993 318 ntBASIC0.14□□□□□ -2.39
BDNFP23560 Y_RNA.42-201ENST00000362660 108 ntBASIC0.13□□□□□ -2.39
BDNFP23560 RNU6-1292P-201ENST00000383856 107 ntBASIC0.13□□□□□ -2.39
BDNFP23560 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.13□□□□□ -2.39
BDNFP23560 RNU6-893P-201ENST00000458841 100 ntBASIC0.13□□□□□ -2.39
BDNFP23560 TRBVB-201ENST00000477100 408 ntBASIC0.13□□□□□ -2.39
BDNFP23560 MIR4431-201ENST00000579990 94 ntBASIC0.13□□□□□ -2.39
BDNFP23560 U2.14-201ENST00000615943 113 ntBASIC0.13□□□□□ -2.39
BDNFP23560 MIR376A2-201ENST00000636782 80 ntBASIC0.13□□□□□ -2.39
BDNFP23560 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.12□□□□□ -2.39
BDNFP23560 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.12□□□□□ -2.39
BDNFP23560 MIR335-201ENST00000362173 94 ntBASIC0.12□□□□□ -2.39
BDNFP23560 Y_RNA.237-201ENST00000364439 102 ntBASIC0.12□□□□□ -2.39
BDNFP23560 SNORA33.2-201ENST00000365413 134 ntBASIC0.12□□□□□ -2.39
BDNFP23560 RNU6-1109P-201ENST00000391187 107 ntBASIC0.12□□□□□ -2.39
BDNFP23560 RNU6-765P-201ENST00000516916 99 ntBASIC0.12□□□□□ -2.39
BDNFP23560 AC069113.3-201ENST00000521019 150 ntBASIC0.12□□□□□ -2.39
BDNFP23560 MIR3129-201ENST00000581095 76 ntBASIC0.12□□□□□ -2.39
BDNFP23560 MIR4282-201ENST00000583613 67 ntBASIC0.12□□□□□ -2.39
BDNFP23560 AL365205.2-201ENST00000594586 68 ntBASIC0.12□□□□□ -2.39
BDNFP23560 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.12□□□□□ -2.39
BDNFP23560 MIR2909-201ENST00000617113 69 ntBASIC0.12□□□□□ -2.39
BDNFP23560 AC091932.4-201ENST00000623386 200 ntBASIC0.12□□□□□ -2.39
BDNFP23560 RNU6-1229P-201ENST00000364295 107 ntBASIC0.11□□□□□ -2.39
BDNFP23560 RNU6-639P-201ENST00000384074 107 ntBASIC0.11□□□□□ -2.39
BDNFP23560 Y_RNA.515-201ENST00000384535 112 ntBASIC0.11□□□□□ -2.39
BDNFP23560 RNU6-381P-201ENST00000391259 108 ntBASIC0.11□□□□□ -2.39
BDNFP23560 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.11□□□□□ -2.39
BDNFP23560 Y_RNA.590-201ENST00000410140 107 ntBASIC0.11□□□□□ -2.39
BDNFP23560 RNU6-651P-201ENST00000411040 105 ntBASIC0.11□□□□□ -2.39
BDNFP23560 AL356055.1-201ENST00000602528 446 ntBASIC0.11□□□□□ -2.39
BDNFP23560 AL365265.1-201ENST00000621045 234 ntBASIC0.11□□□□□ -2.39
BDNFP23560 SNORA36.1-201ENST00000363424 132 ntBASIC0.1□□□□□ -2.39
BDNFP23560 Y_RNA.176-201ENST00000363815 109 ntBASIC0.1□□□□□ -2.39
BDNFP23560 RNU6-728P-201ENST00000365375 104 ntBASIC0.1□□□□□ -2.39
BDNFP23560 RNU6-713P-201ENST00000384761 107 ntBASIC0.1□□□□□ -2.39
BDNFP23560 U8.15-201ENST00000390947 134 ntBASIC0.1□□□□□ -2.39
BDNFP23560 RNU4-43P-201ENST00000410628 137 ntBASIC0.1□□□□□ -2.39
BDNFP23560 MTCYBP6-201ENST00000441810 138 ntBASIC0.1□□□□□ -2.39
BDNFP23560 Y_RNA.679-201ENST00000516416 91 ntBASIC0.1□□□□□ -2.39
BDNFP23560 Y_RNA.681-201ENST00000516445 113 ntBASIC0.1□□□□□ -2.39
BDNFP23560 MIR6082-201ENST00000613604 109 ntBASIC0.1□□□□□ -2.39
BDNFP23560 AL596211.1-201ENST00000569873 2277 ntBASIC0.1□□□□□ -2.39
BDNFP23560 Y_RNA.13-201ENST00000362403 112 ntBASIC0.09□□□□□ -2.4
BDNFP23560 RNU6-403P-201ENST00000363163 104 ntBASIC0.09□□□□□ -2.4
BDNFP23560 RNU6-597P-201ENST00000365620 102 ntBASIC0.09□□□□□ -2.4
BDNFP23560 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.4
BDNFP23560 Y_RNA.617-201ENST00000410920 90 ntBASIC0.09□□□□□ -2.4
BDNFP23560 RNU6-561P-201ENST00000516222 102 ntBASIC0.09□□□□□ -2.4
BDNFP23560 RNA5SP268-201ENST00000516828 124 ntBASIC0.09□□□□□ -2.4
BDNFP23560 AC141846.1-201ENST00000568348 142 ntBASIC0.09□□□□□ -2.4
BDNFP23560 MIR6841-201ENST00000637129 72 ntBASIC0.09□□□□□ -2.4
BDNFP23560 U6.104-201ENST00000637979 90 ntBASIC0.09□□□□□ -2.4
BDNFP23560 RNU6-103P-201ENST00000363686 107 ntBASIC0.08□□□□□ -2.4
BDNFP23560 Y_RNA.280-201ENST00000364765 112 ntBASIC0.08□□□□□ -2.4
BDNFP23560 RNU4-17P-201ENST00000365598 141 ntBASIC0.08□□□□□ -2.4
BDNFP23560 RNU6-949P-201ENST00000384040 107 ntBASIC0.08□□□□□ -2.4
BDNFP23560 MIR644A-201ENST00000385262 94 ntBASIC0.08□□□□□ -2.4
BDNFP23560 Y_RNA.588-201ENST00000391254 102 ntBASIC0.08□□□□□ -2.4
BDNFP23560 AL442663.2-201ENST00000554385 511 ntBASIC0.08□□□□□ -2.4
BDNFP23560 MIR4491-201ENST00000581087 68 ntBASIC0.08□□□□□ -2.4
BDNFP23560 AC021613.1-201ENST00000623880 111 ntBASIC0.08□□□□□ -2.4
BDNFP23560 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.08□□□□□ -2.4
BDNFP23560 SNORA22.1-201ENST00000362701 134 ntBASIC0.07□□□□□ -2.4
BDNFP23560 RNU6-797P-201ENST00000363101 109 ntBASIC0.07□□□□□ -2.4
BDNFP23560 Y_RNA.416-201ENST00000384014 113 ntBASIC0.07□□□□□ -2.4
BDNFP23560 RNU6-815P-201ENST00000384080 113 ntBASIC0.07□□□□□ -2.4
BDNFP23560 AC096949.1-201ENST00000412047 152 ntBASIC0.07□□□□□ -2.4
BDNFP23560 Y_RNA.701-201ENST00000516812 110 ntBASIC0.07□□□□□ -2.4
BDNFP23560 MIR4768-201ENST00000585270 74 ntBASIC0.07□□□□□ -2.4
BDNFP23560 AC044792.1-201ENST00000593294 196 ntBASIC0.07□□□□□ -2.4
BDNFP23560 SNORA9.1-201ENST00000362412 131 ntBASIC0.06□□□□□ -2.4
BDNFP23560 Y_RNA.262-201ENST00000364641 102 ntBASIC0.06□□□□□ -2.4
BDNFP23560 Y_RNA.518-201ENST00000384552 113 ntBASIC0.06□□□□□ -2.4
BDNFP23560 MIR1302-6-201ENST00000408466 90 ntBASIC0.06□□□□□ -2.4
BDNFP23560 RNU5E-9P-201ENST00000411164 104 ntBASIC0.06□□□□□ -2.4
BDNFP23560 SEPT7P4-201ENST00000437076 306 ntBASIC0.06□□□□□ -2.4
BDNFP23560 Y_RNA.660-201ENST00000516002 120 ntBASIC0.06□□□□□ -2.4
BDNFP23560 SNORD116-25-201ENST00000516517 92 ntBASIC0.06□□□□□ -2.4
BDNFP23560 SNORA31.14-201ENST00000516728 116 ntBASIC0.06□□□□□ -2.4
BDNFP23560 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.06□□□□□ -2.4
BDNFP23560 MIR8062-201ENST00000621515 85 ntBASIC0.06□□□□□ -2.4
BDNFP23560 MIR6828-201ENST00000636181 60 ntBASIC0.06□□□□□ -2.4
BDNFP23560 Y_RNA.32-201ENST00000362589 110 ntBASIC0.05□□□□□ -2.4
BDNFP23560 Y_RNA.68-201ENST00000362881 102 ntBASIC0.05□□□□□ -2.4
BDNFP23560 SNORA42.1-201ENST00000363515 137 ntBASIC0.05□□□□□ -2.4
BDNFP23560 Y_RNA.536-201ENST00000384621 113 ntBASIC0.05□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 175.6 ms