Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.488-201ENST00000384403 102 ntBASIC0.95□□□□□ -2.26
MSH3P20585 RNU6-205P-201ENST00000390858 107 ntBASIC0.95□□□□□ -2.26
MSH3P20585 Y_RNA.676-201ENST00000516393 96 ntBASIC0.95□□□□□ -2.26
MSH3P20585 AC023827.1-201ENST00000569247 97 ntBASIC0.95□□□□□ -2.26
MSH3P20585 AC011603.4-201ENST00000611325 277 ntBASIC0.95□□□□□ -2.26
MSH3P20585 AP001340.1-201ENST00000624405 217 ntBASIC0.95□□□□□ -2.26
MSH3P20585 RNU6-1187P-201ENST00000364771 110 ntBASIC0.94□□□□□ -2.26
MSH3P20585 RNU6-1062P-201ENST00000383908 107 ntBASIC0.94□□□□□ -2.26
MSH3P20585 SNORA20-201ENST00000384662 132 ntBASIC0.94□□□□□ -2.26
MSH3P20585 SNORD111-201ENST00000408139 94 ntBASIC0.94□□□□□ -2.26
MSH3P20585 POLR2J4-204ENST00000418424 324 ntBASIC0.94□□□□□ -2.26
MSH3P20585 RNU6-113P-201ENST00000516653 101 ntBASIC0.94□□□□□ -2.26
MSH3P20585 RNA5SP102-201ENST00000516865 106 ntBASIC0.94□□□□□ -2.26
MSH3P20585 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.94□□□□□ -2.26
MSH3P20585 SNORA22.1-201ENST00000362701 134 ntBASIC0.93□□□□□ -2.26
MSH3P20585 RNU4-16P-201ENST00000364737 141 ntBASIC0.93□□□□□ -2.26
MSH3P20585 SNORA2B-201ENST00000384583 137 ntBASIC0.93□□□□□ -2.26
MSH3P20585 SNORD12C-201ENST00000386307 89 ntBASIC0.93□□□□□ -2.26
MSH3P20585 RNU6-893P-201ENST00000458841 100 ntBASIC0.93□□□□□ -2.26
MSH3P20585 snoU13.2-201ENST00000459201 104 ntBASIC0.93□□□□□ -2.26
MSH3P20585 UBL5P1-201ENST00000507979 193 ntBASIC0.93□□□□□ -2.26
MSH3P20585 RNU6-346P-201ENST00000516288 111 ntBASIC0.93□□□□□ -2.26
MSH3P20585 MIR3121-201ENST00000579680 77 ntBASIC0.93□□□□□ -2.26
MSH3P20585 RNU6-915P-201ENST00000364943 103 ntBASIC0.92□□□□□ -2.26
MSH3P20585 RNU6-690P-201ENST00000365242 106 ntBASIC0.92□□□□□ -2.26
MSH3P20585 Y_RNA.420-201ENST00000384043 110 ntBASIC0.92□□□□□ -2.26
MSH3P20585 RNA5SP144-201ENST00000410846 116 ntBASIC0.92□□□□□ -2.26
MSH3P20585 SNORD124-201ENST00000459577 104 ntBASIC0.92□□□□□ -2.26
MSH3P20585 RNU6-426P-201ENST00000516464 97 ntBASIC0.92□□□□□ -2.26
MSH3P20585 AP001328.1-201ENST00000528550 176 ntBASIC0.92□□□□□ -2.26
MSH3P20585 MIR6740-201ENST00000618268 113 ntBASIC0.92□□□□□ -2.26
MSH3P20585 MIR200A-201ENST00000384875 90 ntBASIC0.91□□□□□ -2.26
MSH3P20585 MIR588-201ENST00000384900 83 ntBASIC0.91□□□□□ -2.26
MSH3P20585 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.91□□□□□ -2.26
MSH3P20585 RNA5SP272-201ENST00000516095 111 ntBASIC0.91□□□□□ -2.26
MSH3P20585 RNU6-240P-201ENST00000516098 97 ntBASIC0.91□□□□□ -2.26
MSH3P20585 Y_RNA.692-201ENST00000516627 105 ntBASIC0.91□□□□□ -2.26
MSH3P20585 RNU6-1258P-201ENST00000516911 111 ntBASIC0.91□□□□□ -2.26
MSH3P20585 AC133485.4-201ENST00000561835 220 ntBASIC0.91□□□□□ -2.26
MSH3P20585 AC138907.4-201ENST00000570107 226 ntBASIC0.91□□□□□ -2.26
MSH3P20585 Y_RNA.757-201ENST00000578934 114 ntBASIC0.91□□□□□ -2.26
MSH3P20585 RNU6-94P-201ENST00000607728 107 ntBASIC0.91□□□□□ -2.26
MSH3P20585 MIR532-201ENST00000385025 91 ntBASIC0.9□□□□□ -2.27
MSH3P20585 MIR563-201ENST00000385080 79 ntBASIC0.9□□□□□ -2.27
MSH3P20585 RNU7-62P-201ENST00000458856 62 ntBASIC0.9□□□□□ -2.27
MSH3P20585 MIR4305-201ENST00000583252 102 ntBASIC0.9□□□□□ -2.27
MSH3P20585 MIR8070-201ENST00000616510 88 ntBASIC0.9□□□□□ -2.27
MSH3P20585 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.9□□□□□ -2.27
MSH3P20585 MIR96-201ENST00000362288 78 ntBASIC0.89□□□□□ -2.27
MSH3P20585 Y_RNA.171-201ENST00000363760 102 ntBASIC0.89□□□□□ -2.27
MSH3P20585 Y_RNA.343-201ENST00000365354 112 ntBASIC0.89□□□□□ -2.27
MSH3P20585 Y_RNA.568-201ENST00000384742 113 ntBASIC0.89□□□□□ -2.27
MSH3P20585 snoU13.21-201ENST00000459368 105 ntBASIC0.89□□□□□ -2.27
MSH3P20585 RPL39P28-201ENST00000465655 155 ntBASIC0.89□□□□□ -2.27
MSH3P20585 AC108081.1-201ENST00000604358 221 ntBASIC0.89□□□□□ -2.27
MSH3P20585 MIR6857-201ENST00000613267 93 ntBASIC0.89□□□□□ -2.27
MSH3P20585 uc_338.6-201ENST00000613544 171 ntBASIC0.89□□□□□ -2.27
MSH3P20585 AC010332.2-201ENST00000613083 1904 ntBASIC0.89□□□□□ -2.27
MSH3P20585 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
MSH3P20585 SNORD114-24-201ENST00000365029 72 ntBASIC0.88□□□□□ -2.27
MSH3P20585 SNORA25.9-201ENST00000365087 128 ntBASIC0.88□□□□□ -2.27
MSH3P20585 RNU6-746P-201ENST00000384112 109 ntBASIC0.88□□□□□ -2.27
MSH3P20585 RNU6-1165P-201ENST00000410119 107 ntBASIC0.88□□□□□ -2.27
MSH3P20585 AL022718.1-201ENST00000412004 84 ntBASIC0.88□□□□□ -2.27
MSH3P20585 RNU5E-3P-201ENST00000515913 68 ntBASIC0.88□□□□□ -2.27
MSH3P20585 RNU2-35P-201ENST00000516446 142 ntBASIC0.88□□□□□ -2.27
MSH3P20585 AC021443.1-201ENST00000604478 211 ntBASIC0.88□□□□□ -2.27
MSH3P20585 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.88□□□□□ -2.27
MSH3P20585 MIR30D-201ENST00000362283 70 ntBASIC0.87□□□□□ -2.27
MSH3P20585 SNORD115-2-201ENST00000362842 82 ntBASIC0.87□□□□□ -2.27
MSH3P20585 Y_RNA.280-201ENST00000364765 112 ntBASIC0.87□□□□□ -2.27
MSH3P20585 SNORD115-20-201ENST00000365099 82 ntBASIC0.87□□□□□ -2.27
MSH3P20585 Y_RNA.366-201ENST00000365540 102 ntBASIC0.87□□□□□ -2.27
MSH3P20585 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.87□□□□□ -2.27
MSH3P20585 MIR1276-201ENST00000408707 83 ntBASIC0.87□□□□□ -2.27
MSH3P20585 AL512326.2-201ENST00000426359 151 ntBASIC0.87□□□□□ -2.27
MSH3P20585 MTND4LP9-201ENST00000427694 174 ntBASIC0.87□□□□□ -2.27
MSH3P20585 FABP5P4-201ENST00000437203 171 ntBASIC0.87□□□□□ -2.27
MSH3P20585 Y_RNA.703-201ENST00000516846 111 ntBASIC0.87□□□□□ -2.27
MSH3P20585 MIR4661-201ENST00000582720 75 ntBASIC0.87□□□□□ -2.27
MSH3P20585 MIR3133-201ENST00000583157 78 ntBASIC0.87□□□□□ -2.27
MSH3P20585 U7.2-201ENST00000607576 63 ntBASIC0.87□□□□□ -2.27
MSH3P20585 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.87□□□□□ -2.27
MSH3P20585 RNU6-774P-201ENST00000363238 107 ntBASIC0.86□□□□□ -2.27
MSH3P20585 Y_RNA.114-201ENST00000363265 113 ntBASIC0.86□□□□□ -2.27
MSH3P20585 RNU6-934P-201ENST00000365154 107 ntBASIC0.86□□□□□ -2.27
MSH3P20585 Y_RNA.470-201ENST00000384307 117 ntBASIC0.86□□□□□ -2.27
MSH3P20585 Y_RNA.531-201ENST00000384589 121 ntBASIC0.86□□□□□ -2.27
MSH3P20585 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.86□□□□□ -2.27
MSH3P20585 RNU6-257P-201ENST00000410238 98 ntBASIC0.86□□□□□ -2.27
MSH3P20585 RNU6-994P-201ENST00000410507 111 ntBASIC0.86□□□□□ -2.27
MSH3P20585 SNORD83.1-201ENST00000411362 77 ntBASIC0.86□□□□□ -2.27
MSH3P20585 MIR18B-201ENST00000454574 71 ntBASIC0.86□□□□□ -2.27
MSH3P20585 RNU7-164P-201ENST00000459221 62 ntBASIC0.86□□□□□ -2.27
MSH3P20585 RNU7-113P-201ENST00000459273 62 ntBASIC0.86□□□□□ -2.27
MSH3P20585 AC113410.1-201ENST00000505029 247 ntBASIC0.86□□□□□ -2.27
MSH3P20585 MIR4698-201ENST00000577795 80 ntBASIC0.86□□□□□ -2.27
MSH3P20585 AL137067.1-201ENST00000615933 120 ntBASIC0.86□□□□□ -2.27
MSH3P20585 MIR6767-201ENST00000637302 66 ntBASIC0.86□□□□□ -2.27
MSH3P20585 RNU6-369P-201ENST00000362515 102 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms