Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
RNF40O75150 AC073325.2-201ENST00000339545 159 ntBASIC3.07□□□□□ -1.92
RNF40O75150 MIR520C-201ENST00000385005 87 ntBASIC3.07□□□□□ -1.92
RNF40O75150 AC027119.1-201ENST00000440877 241 ntBASIC3.07□□□□□ -1.92
RNF40O75150 HSPE1P24-201ENST00000450782 238 ntBASIC3.07□□□□□ -1.92
RNF40O75150 AC023790.1-201ENST00000482174 347 ntBASIC3.07□□□□□ -1.92
RNF40O75150 RNA5SP481-201ENST00000516814 122 ntBASIC3.07□□□□□ -1.92
RNF40O75150 MIR4500-201ENST00000579472 76 ntBASIC3.07□□□□□ -1.92
RNF40O75150 MIR3162-201ENST00000581818 82 ntBASIC3.07□□□□□ -1.92
RNF40O75150 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
RNF40O75150 Y_RNA.283-201ENST00000364798 112 ntBASIC3.06□□□□□ -1.92
RNF40O75150 RNU6-649P-201ENST00000384463 107 ntBASIC3.06□□□□□ -1.92
RNF40O75150 RNU2-59P-201ENST00000410482 191 ntBASIC3.06□□□□□ -1.92
RNF40O75150 RNU2-7P-201ENST00000410794 178 ntBASIC3.06□□□□□ -1.92
RNF40O75150 AC244023.1-201ENST00000426884 112 ntBASIC3.06□□□□□ -1.92
RNF40O75150 BX276092.1-201ENST00000427368 251 ntBASIC3.06□□□□□ -1.92
RNF40O75150 AC105272.1-201ENST00000438604 198 ntBASIC3.06□□□□□ -1.92
RNF40O75150 RNU7-41P-201ENST00000515917 61 ntBASIC3.06□□□□□ -1.92
RNF40O75150 RNU6-303P-201ENST00000517091 106 ntBASIC3.06□□□□□ -1.92
RNF40O75150 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
RNF40O75150 MIR4319-201ENST00000577285 85 ntBASIC3.06□□□□□ -1.92
RNF40O75150 AC242498.1-201ENST00000604134 111 ntBASIC3.06□□□□□ -1.92
RNF40O75150 AC007318.2-201ENST00000620999 243 ntBASIC3.06□□□□□ -1.92
RNF40O75150 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
RNF40O75150 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
RNF40O75150 Y_RNA.264-201ENST00000364665 102 ntBASIC3.05□□□□□ -1.92
RNF40O75150 MIR627-201ENST00000384979 97 ntBASIC3.05□□□□□ -1.92
RNF40O75150 snoU13.2-201ENST00000459201 104 ntBASIC3.05□□□□□ -1.92
RNF40O75150 AC121758.2-201ENST00000553271 193 ntBASIC3.05□□□□□ -1.92
RNF40O75150 U6.109-201ENST00000636749 87 ntBASIC3.05□□□□□ -1.92
RNF40O75150 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.05□□□□□ -1.92
RNF40O75150 MIR518A2-201ENST00000384966 87 ntBASIC3.04□□□□□ -1.92
RNF40O75150 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
RNF40O75150 HMGN2P39-201ENST00000398005 273 ntBASIC3.04□□□□□ -1.92
RNF40O75150 MIR3935-201ENST00000583472 104 ntBASIC3.04□□□□□ -1.92
RNF40O75150 MIR4536-1-201ENST00000583537 88 ntBASIC3.04□□□□□ -1.92
RNF40O75150 U6.111-201ENST00000636093 83 ntBASIC3.04□□□□□ -1.92
RNF40O75150 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
RNF40O75150 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
RNF40O75150 RNU6-208P-201ENST00000362431 107 ntBASIC3.03□□□□□ -1.92
RNF40O75150 Y_RNA.491-201ENST00000384417 107 ntBASIC3.03□□□□□ -1.92
RNF40O75150 SNORD90-201ENST00000391145 111 ntBASIC3.03□□□□□ -1.92
RNF40O75150 RNU6ATAC42P-201ENST00000408637 95 ntBASIC3.03□□□□□ -1.92
RNF40O75150 AC009474.2-201ENST00000451383 136 ntBASIC3.03□□□□□ -1.92
RNF40O75150 MIR3126-201ENST00000577443 74 ntBASIC3.03□□□□□ -1.92
RNF40O75150 AL357312.1-201ENST00000603879 298 ntBASIC3.03□□□□□ -1.92
RNF40O75150 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
RNF40O75150 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.02□□□□□ -1.93
RNF40O75150 RNU6-471P-201ENST00000383944 106 ntBASIC3.02□□□□□ -1.93
RNF40O75150 RNU6-800P-201ENST00000384473 103 ntBASIC3.02□□□□□ -1.93
RNF40O75150 Y_RNA.596-201ENST00000410462 109 ntBASIC3.02□□□□□ -1.93
RNF40O75150 RNA5SP501-201ENST00000410990 112 ntBASIC3.02□□□□□ -1.93
RNF40O75150 RNA5SP184-201ENST00000411071 108 ntBASIC3.02□□□□□ -1.93
RNF40O75150 AC092427.1-202ENST00000430569 476 ntBASIC3.02□□□□□ -1.93
RNF40O75150 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC3.02□□□□□ -1.93
RNF40O75150 AC067747.1-201ENST00000608026 250 ntBASIC3.02□□□□□ -1.93
RNF40O75150 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC3.02□□□□□ -1.93
RNF40O75150 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
RNF40O75150 AC080100.1-201ENST00000624239 5356 ntBASIC3.01□□□□□ -1.93
RNF40O75150 Y_RNA.119-201ENST00000363301 96 ntBASIC3.01□□□□□ -1.93
RNF40O75150 MIR516A2-201ENST00000384888 90 ntBASIC3.01□□□□□ -1.93
RNF40O75150 MIR516A1-201ENST00000385033 90 ntBASIC3.01□□□□□ -1.93
RNF40O75150 MIR653-201ENST00000385279 96 ntBASIC3.01□□□□□ -1.93
RNF40O75150 AC108938.1-201ENST00000451204 136 ntBASIC3.01□□□□□ -1.93
RNF40O75150 SNORD92-201ENST00000585078 85 ntBASIC3.01□□□□□ -1.93
RNF40O75150 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
RNF40O75150 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
RNF40O75150 AC062016.1-201ENST00000355719 319 ntBASIC3□□□□□ -1.93
RNF40O75150 RNU6-1241P-201ENST00000384536 107 ntBASIC3□□□□□ -1.93
RNF40O75150 RNU6-851P-201ENST00000384565 107 ntBASIC3□□□□□ -1.93
RNF40O75150 RNU6-1254P-201ENST00000391266 104 ntBASIC3□□□□□ -1.93
RNF40O75150 MIR3670-2-201ENST00000582974 65 ntBASIC3□□□□□ -1.93
RNF40O75150 MIR3670-1-201ENST00000584160 65 ntBASIC3□□□□□ -1.93
RNF40O75150 MIR3670-3-201ENST00000584855 65 ntBASIC3□□□□□ -1.93
RNF40O75150 MIR3670-4-201ENST00000612260 65 ntBASIC3□□□□□ -1.93
RNF40O75150 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3□□□□□ -1.93
RNF40O75150 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
RNF40O75150 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3□□□□□ -1.93
RNF40O75150 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
RNF40O75150 RNU1-91P-201ENST00000364746 163 ntBASIC2.99□□□□□ -1.93
RNF40O75150 MIR1302-7-201ENST00000408841 72 ntBASIC2.99□□□□□ -1.93
RNF40O75150 AC087499.2-201ENST00000432861 149 ntBASIC2.99□□□□□ -1.93
RNF40O75150 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
RNF40O75150 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
RNF40O75150 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.98□□□□□ -1.93
RNF40O75150 MIR30D-201ENST00000362283 70 ntBASIC2.98□□□□□ -1.93
RNF40O75150 RNU6-1123P-201ENST00000362347 106 ntBASIC2.98□□□□□ -1.93
RNF40O75150 SNORD115-31-201ENST00000365318 82 ntBASIC2.98□□□□□ -1.93
RNF40O75150 MIR548U-201ENST00000390728 81 ntBASIC2.98□□□□□ -1.93
RNF40O75150 SNORD30.1-201ENST00000391309 70 ntBASIC2.98□□□□□ -1.93
RNF40O75150 AC015818.7-201ENST00000428754 109 ntBASIC2.98□□□□□ -1.93
RNF40O75150 SNORA4-201ENST00000584302 138 ntBASIC2.98□□□□□ -1.93
RNF40O75150 AP000942.3-201ENST00000603702 160 ntBASIC2.98□□□□□ -1.93
RNF40O75150 MIR6740-201ENST00000618268 113 ntBASIC2.98□□□□□ -1.93
RNF40O75150 NEAT1_2.1-201ENST00000620525 105 ntBASIC2.98□□□□□ -1.93
RNF40O75150 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.98□□□□□ -1.93
RNF40O75150 AP000648.3-201ENST00000623539 4507 ntBASIC2.97□□□□□ -1.93
RNF40O75150 RNU1-138P-201ENST00000384093 164 ntBASIC2.97□□□□□ -1.93
RNF40O75150 RNU6-987P-201ENST00000384759 104 ntBASIC2.97□□□□□ -1.93
RNF40O75150 MIR588-201ENST00000384900 83 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 203.9 ms