Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIR34C-201ENST00000384831 77 ntBASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 MIR524-201ENST00000385242 87 ntBASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 SNORA3.2-201ENST00000408221 125 ntBASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 RNA5SP237-201ENST00000410414 113 ntBASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 RPL31P63-201ENST00000422565 375 ntBASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 JTBP1-201ENST00000441314 247 ntBASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 snoU13.15-201ENST00000459407 104 ntBASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 AL357312.1-201ENST00000603879 298 ntBASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 AC245884.12-201ENST00000615364 59 ntBASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
LIMD1Q9UGP4 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 RNU6-1163P-201ENST00000364516 107 ntBASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 RNU6-1276P-201ENST00000365372 104 ntBASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 MIR513A1-201ENST00000385138 129 ntBASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 MIR548G-201ENST00000408442 89 ntBASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 RNU6-402P-201ENST00000410678 103 ntBASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 RNU7-48P-201ENST00000458875 63 ntBASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 SNORD111.1-201ENST00000516421 86 ntBASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 RNU6-86P-201ENST00000606534 107 ntBASIC2.84□□□□□ -1.95
LIMD1Q9UGP4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
LIMD1Q9UGP4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.84□□□□□ -1.96
LIMD1Q9UGP4 AC131280.1-202ENST00000624067 4211 ntBASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 RNA5SP259-201ENST00000365541 109 ntBASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 RNU6-1321P-201ENST00000390905 107 ntBASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 AL161935.2-201ENST00000414627 60 ntBASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 RPS12P2-201ENST00000439728 269 ntBASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 MIR4668-201ENST00000582284 70 ntBASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 AC103810.7-201ENST00000607821 91 ntBASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 ZNF658B-202ENST00000615961 3375 ntBASIC2.83□□□□□ -1.96
LIMD1Q9UGP4 Y_RNA.567-201ENST00000384736 106 ntBASIC2.82□□□□□ -1.96
LIMD1Q9UGP4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC2.82□□□□□ -1.96
LIMD1Q9UGP4 AC055731.1-201ENST00000474387 401 ntBASIC2.82□□□□□ -1.96
LIMD1Q9UGP4 RNU7-41P-201ENST00000515917 61 ntBASIC2.82□□□□□ -1.96
LIMD1Q9UGP4 AP001362.1-201ENST00000625165 124 ntBASIC2.82□□□□□ -1.96
LIMD1Q9UGP4 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LIMD1Q9UGP4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.81□□□□□ -1.96
LIMD1Q9UGP4 RNU6-1307P-201ENST00000391012 103 ntBASIC2.81□□□□□ -1.96
LIMD1Q9UGP4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.81□□□□□ -1.96
LIMD1Q9UGP4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.81□□□□□ -1.96
LIMD1Q9UGP4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 RNU6-1244P-201ENST00000363614 108 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 RNU6-219P-201ENST00000364728 107 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 RNU6-497P-201ENST00000365316 104 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 RNU6-1124P-201ENST00000384169 107 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 SNORD23.1-201ENST00000408212 104 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 SNORD88.1-201ENST00000408684 91 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 Y_RNA.620-201ENST00000411009 88 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 Z98742.3-201ENST00000418637 326 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 SPINT5P-201ENST00000448174 155 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 AC009474.2-201ENST00000451383 136 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 AC133485.1-201ENST00000567176 124 ntBASIC2.8□□□□□ -1.96
LIMD1Q9UGP4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LIMD1Q9UGP4 RNY1P13-201ENST00000365030 105 ntBASIC2.79□□□□□ -1.96
LIMD1Q9UGP4 RNU6-1237P-201ENST00000384777 107 ntBASIC2.79□□□□□ -1.96
LIMD1Q9UGP4 MIR512-1-201ENST00000384913 84 ntBASIC2.79□□□□□ -1.96
LIMD1Q9UGP4 MIR5588-201ENST00000581890 63 ntBASIC2.79□□□□□ -1.96
LIMD1Q9UGP4 AC105081.1-201ENST00000617727 106 ntBASIC2.79□□□□□ -1.96
LIMD1Q9UGP4 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LIMD1Q9UGP4 RNA5SP289-201ENST00000362332 137 ntBASIC2.78□□□□□ -1.96
LIMD1Q9UGP4 Y_RNA.73-201ENST00000362910 113 ntBASIC2.78□□□□□ -1.96
LIMD1Q9UGP4 RNU6-979P-201ENST00000383896 107 ntBASIC2.78□□□□□ -1.96
LIMD1Q9UGP4 Y_RNA.426-201ENST00000384068 113 ntBASIC2.78□□□□□ -1.96
LIMD1Q9UGP4 AC141846.1-201ENST00000568348 142 ntBASIC2.78□□□□□ -1.96
LIMD1Q9UGP4 AL662814.1-201ENST00000617364 121 ntBASIC2.78□□□□□ -1.96
LIMD1Q9UGP4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
LIMD1Q9UGP4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 RNU6-1125P-201ENST00000363601 107 ntBASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 SNORD114-30-201ENST00000364448 72 ntBASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 RNA5SP138-201ENST00000365098 114 ntBASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 RNU6-480P-201ENST00000384332 107 ntBASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 SUMO1P4-201ENST00000429430 302 ntBASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 RPS29P6-201ENST00000438196 145 ntBASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 RNU7-171P-201ENST00000459581 62 ntBASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 MTND5P40-201ENST00000559945 246 ntBASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LIMD1Q9UGP4 RNU6-228P-201ENST00000362700 106 ntBASIC2.76□□□□□ -1.97
LIMD1Q9UGP4 RNY1P4-201ENST00000384595 115 ntBASIC2.76□□□□□ -1.97
LIMD1Q9UGP4 AC019129.1-201ENST00000403786 261 ntBASIC2.76□□□□□ -1.97
LIMD1Q9UGP4 AC067747.1-201ENST00000608026 250 ntBASIC2.76□□□□□ -1.97
LIMD1Q9UGP4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.76□□□□□ -1.97
LIMD1Q9UGP4 MIR6733-201ENST00000635723 61 ntBASIC2.76□□□□□ -1.97
LIMD1Q9UGP4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
LIMD1Q9UGP4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LIMD1Q9UGP4 WWP1P1-201ENST00000466609 2769 ntBASIC2.75□□□□□ -1.97
LIMD1Q9UGP4 Y_RNA.173-201ENST00000363776 113 ntBASIC2.75□□□□□ -1.97
LIMD1Q9UGP4 RNU4-53P-201ENST00000410828 140 ntBASIC2.75□□□□□ -1.97
LIMD1Q9UGP4 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.75□□□□□ -1.97
LIMD1Q9UGP4 SEPT14P17-201ENST00000617978 177 ntBASIC2.75□□□□□ -1.97
LIMD1Q9UGP4 AC012676.2-201ENST00000619258 186 ntBASIC2.75□□□□□ -1.97
LIMD1Q9UGP4 RNU6-949P-201ENST00000384040 107 ntBASIC2.74□□□□□ -1.97
LIMD1Q9UGP4 SNORD41-201ENST00000386967 70 ntBASIC2.74□□□□□ -1.97
LIMD1Q9UGP4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.74□□□□□ -1.97
LIMD1Q9UGP4 AC027119.1-201ENST00000440877 241 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms