Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 AC009474.2-201ENST00000451383 136 ntBASIC1.99□□□□□ -2.09
SOX9P48436 RNA5SP182-201ENST00000516064 82 ntBASIC1.99□□□□□ -2.09
SOX9P48436 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.99□□□□□ -2.09
SOX9P48436 MIR548AO-201ENST00000579992 96 ntBASIC1.99□□□□□ -2.09
SOX9P48436 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.99□□□□□ -2.09
SOX9P48436 uc_338.20-201ENST00000621563 178 ntBASIC1.99□□□□□ -2.09
SOX9P48436 ZNF355P-201ENST00000427301 3216 ntBASIC1.99□□□□□ -2.09
SOX9P48436 AL161722.3-201ENST00000605789 2983 ntBASIC1.99□□□□□ -2.09
SOX9P48436 Y_RNA.198-201ENST00000364013 98 ntBASIC1.98□□□□□ -2.09
SOX9P48436 Y_RNA.353-201ENST00000365440 108 ntBASIC1.98□□□□□ -2.09
SOX9P48436 Y_RNA.430-201ENST00000384081 110 ntBASIC1.98□□□□□ -2.09
SOX9P48436 RNA5SP445-201ENST00000515889 115 ntBASIC1.98□□□□□ -2.09
SOX9P48436 SNORA31.4-201ENST00000516049 129 ntBASIC1.98□□□□□ -2.09
SOX9P48436 RNU2-35P-201ENST00000516446 142 ntBASIC1.98□□□□□ -2.09
SOX9P48436 MIR3192-201ENST00000584920 77 ntBASIC1.98□□□□□ -2.09
SOX9P48436 MIR4781-201ENST00000585250 76 ntBASIC1.98□□□□□ -2.09
SOX9P48436 MIR8081-201ENST00000611533 95 ntBASIC1.98□□□□□ -2.09
SOX9P48436 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.97□□□□□ -2.09
SOX9P48436 RNU6-1144P-201ENST00000384247 104 ntBASIC1.97□□□□□ -2.09
SOX9P48436 SNORD38B-201ENST00000384690 67 ntBASIC1.97□□□□□ -2.09
SOX9P48436 SNORA26.6-201ENST00000391256 115 ntBASIC1.97□□□□□ -2.09
SOX9P48436 POLR2J4-204ENST00000418424 324 ntBASIC1.97□□□□□ -2.09
SOX9P48436 AC245047.7-201ENST00000440265 293 ntBASIC1.97□□□□□ -2.09
SOX9P48436 AC245517.4-201ENST00000448601 281 ntBASIC1.97□□□□□ -2.09
SOX9P48436 SNORD13-201ENST00000459299 104 ntBASIC1.97□□□□□ -2.09
SOX9P48436 MIR3664-201ENST00000579074 99 ntBASIC1.97□□□□□ -2.09
SOX9P48436 MIR8055-201ENST00000610739 97 ntBASIC1.97□□□□□ -2.09
SOX9P48436 SNORD38B-202ENST00000625943 69 ntBASIC1.97□□□□□ -2.09
SOX9P48436 Z97988.1-201ENST00000637697 135 ntBASIC1.97□□□□□ -2.09
SOX9P48436 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
SOX9P48436 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
SOX9P48436 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
SOX9P48436 Y_RNA.118-201ENST00000363300 101 ntBASIC1.96□□□□□ -2.1
SOX9P48436 RNA5SP160-201ENST00000364866 120 ntBASIC1.96□□□□□ -2.1
SOX9P48436 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.96□□□□□ -2.1
SOX9P48436 AL133373.1-201ENST00000497098 94 ntBASIC1.96□□□□□ -2.1
SOX9P48436 AC004812.1-201ENST00000540773 146 ntBASIC1.96□□□□□ -2.1
SOX9P48436 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SOX9P48436 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SOX9P48436 Y_RNA.299-201ENST00000364973 94 ntBASIC1.95□□□□□ -2.1
SOX9P48436 RNA5SP190-201ENST00000365222 118 ntBASIC1.95□□□□□ -2.1
SOX9P48436 Y_RNA.531-201ENST00000384589 121 ntBASIC1.95□□□□□ -2.1
SOX9P48436 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
SOX9P48436 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.95□□□□□ -2.1
SOX9P48436 RNA5SP364-201ENST00000516938 78 ntBASIC1.95□□□□□ -2.1
SOX9P48436 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.95□□□□□ -2.1
SOX9P48436 AL512310.8-201ENST00000550183 120 ntBASIC1.95□□□□□ -2.1
SOX9P48436 MIR3163-201ENST00000581592 73 ntBASIC1.95□□□□□ -2.1
SOX9P48436 MIR6841-201ENST00000637129 72 ntBASIC1.95□□□□□ -2.1
SOX9P48436 MIR337-201ENST00000362281 93 ntBASIC1.94□□□□□ -2.1
SOX9P48436 SNORA25.3-201ENST00000363205 127 ntBASIC1.94□□□□□ -2.1
SOX9P48436 RNY4P6-201ENST00000363667 96 ntBASIC1.94□□□□□ -2.1
SOX9P48436 SNORD116-21-201ENST00000384507 92 ntBASIC1.94□□□□□ -2.1
SOX9P48436 MIR548A1-201ENST00000385041 97 ntBASIC1.94□□□□□ -2.1
SOX9P48436 MIR9-3-201ENST00000385084 90 ntBASIC1.94□□□□□ -2.1
SOX9P48436 AL512326.2-201ENST00000426359 151 ntBASIC1.94□□□□□ -2.1
SOX9P48436 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.94□□□□□ -2.1
SOX9P48436 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.94□□□□□ -2.1
SOX9P48436 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.94□□□□□ -2.1
SOX9P48436 AC113410.1-201ENST00000505029 247 ntBASIC1.94□□□□□ -2.1
SOX9P48436 RNA5SP33-201ENST00000516687 98 ntBASIC1.94□□□□□ -2.1
SOX9P48436 RN7SKP88-201ENST00000516847 250 ntBASIC1.94□□□□□ -2.1
SOX9P48436 7SK.8-201ENST00000612110 250 ntBASIC1.94□□□□□ -2.1
SOX9P48436 7SK.11-201ENST00000615477 250 ntBASIC1.94□□□□□ -2.1
SOX9P48436 7SK.13-201ENST00000622040 250 ntBASIC1.94□□□□□ -2.1
SOX9P48436 AC084768.2-201ENST00000622736 221 ntBASIC1.94□□□□□ -2.1
SOX9P48436 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SOX9P48436 Y_RNA.171-201ENST00000363760 102 ntBASIC1.93□□□□□ -2.1
SOX9P48436 RNU6-396P-201ENST00000365369 105 ntBASIC1.93□□□□□ -2.1
SOX9P48436 Y_RNA.508-201ENST00000384502 114 ntBASIC1.93□□□□□ -2.1
SOX9P48436 RPS29P11-201ENST00000496507 171 ntBASIC1.93□□□□□ -2.1
SOX9P48436 SNORA25.15-201ENST00000516487 89 ntBASIC1.93□□□□□ -2.1
SOX9P48436 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.93□□□□□ -2.1
SOX9P48436 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.93□□□□□ -2.1
SOX9P48436 RNU6-1325P-201ENST00000364905 105 ntBASIC1.92□□□□□ -2.1
SOX9P48436 RNU6-880P-201ENST00000384526 107 ntBASIC1.92□□□□□ -2.1
SOX9P48436 RNU2-40P-201ENST00000410833 196 ntBASIC1.92□□□□□ -2.1
SOX9P48436 RNU1-40P-201ENST00000516816 164 ntBASIC1.92□□□□□ -2.1
SOX9P48436 RNU1-97P-201ENST00000516872 164 ntBASIC1.92□□□□□ -2.1
SOX9P48436 AC022523.2-201ENST00000561045 150 ntBASIC1.92□□□□□ -2.1
SOX9P48436 MIR6129-201ENST00000616087 109 ntBASIC1.92□□□□□ -2.1
SOX9P48436 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SOX9P48436 MIR103A2-201ENST00000362154 78 ntBASIC1.91□□□□□ -2.1
SOX9P48436 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SOX9P48436 RNU6-602P-201ENST00000411155 105 ntBASIC1.91□□□□□ -2.1
SOX9P48436 RPS27P16-201ENST00000425758 201 ntBASIC1.91□□□□□ -2.1
SOX9P48436 AC025033.1-201ENST00000463883 194 ntBASIC1.91□□□□□ -2.1
SOX9P48436 MIR2115-201ENST00000516657 100 ntBASIC1.91□□□□□ -2.1
SOX9P48436 RNU6-902P-201ENST00000517212 91 ntBASIC1.91□□□□□ -2.1
SOX9P48436 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX9P48436 AP000753.3-201ENST00000604083 169 ntBASIC1.91□□□□□ -2.1
SOX9P48436 SNORD77B-201ENST00000391112 67 ntBASIC1.9□□□□□ -2.11
SOX9P48436 RPS23P4-201ENST00000487908 423 ntBASIC1.9□□□□□ -2.11
SOX9P48436 RNU7-6P-201ENST00000516845 62 ntBASIC1.9□□□□□ -2.11
SOX9P48436 AC007012.1-201ENST00000567192 175 ntBASIC1.9□□□□□ -2.11
SOX9P48436 AC024614.2-201ENST00000577584 372 ntBASIC1.9□□□□□ -2.11
SOX9P48436 snoU13.31-201ENST00000607291 104 ntBASIC1.9□□□□□ -2.11
SOX9P48436 MIR378A-201ENST00000362177 66 ntBASIC1.89□□□□□ -2.11
SOX9P48436 SNORD115-2-201ENST00000362842 82 ntBASIC1.89□□□□□ -2.11
SOX9P48436 RNA5SP264-201ENST00000363115 107 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 9.4 ms