Protein–RNA interactions for Protein: P35625

TIMP3, Metalloproteinase inhibitor 3, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3P35625 RNU6-240P-201ENST00000516098 97 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 RNU6-1333P-201ENST00000516162 93 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 RNU6-479P-201ENST00000516348 105 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 SNORD111.1-201ENST00000516421 86 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 AC133485.4-201ENST00000561835 220 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 AC138907.4-201ENST00000570107 226 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 MIR548AI-201ENST00000579940 88 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 AL357312.1-201ENST00000603879 298 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 AC108081.1-201ENST00000604358 221 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 GHRLOS.1-201ENST00000610995 70 ntBASIC1.22□□□□□ -2.21
TIMP3P35625 Y_RNA.261-201ENST00000364631 102 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 RNU6-1168P-201ENST00000390831 104 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 RNU2-51P-201ENST00000410708 197 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 RNU7-107P-201ENST00000459121 61 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 RN7SKP19-201ENST00000516016 252 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 RN7SKP179-201ENST00000516126 217 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 RNU6-947P-201ENST00000516264 106 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 RNU6-313P-201ENST00000516317 112 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 RNU6-1061P-201ENST00000516530 99 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 AC019176.1-201ENST00000518519 225 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 MIR3937-201ENST00000580135 106 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 HSPE1P19-201ENST00000603327 295 ntBASIC1.21□□□□□ -2.22
TIMP3P35625 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
TIMP3P35625 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
TIMP3P35625 MIR26B-201ENST00000362251 77 ntBASIC1.2□□□□□ -2.22
TIMP3P35625 Y_RNA.291-201ENST00000364886 113 ntBASIC1.2□□□□□ -2.22
TIMP3P35625 Y_RNA.366-201ENST00000365540 102 ntBASIC1.2□□□□□ -2.22
TIMP3P35625 RNU6-1065P-201ENST00000384513 106 ntBASIC1.2□□□□□ -2.22
TIMP3P35625 RNU7-73P-201ENST00000458743 63 ntBASIC1.2□□□□□ -2.22
TIMP3P35625 snoU13.16-201ENST00000459350 104 ntBASIC1.2□□□□□ -2.22
TIMP3P35625 RNU7-41P-201ENST00000515917 61 ntBASIC1.2□□□□□ -2.22
TIMP3P35625 RNU6-659P-201ENST00000516454 104 ntBASIC1.2□□□□□ -2.22
TIMP3P35625 AL137067.1-201ENST00000615933 120 ntBASIC1.2□□□□□ -2.22
TIMP3P35625 RNU4-16P-201ENST00000364737 141 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 SNORA25.9-201ENST00000365087 128 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 SNORA22C-201ENST00000384614 134 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 MIR499A-201ENST00000384903 122 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 RNU6-913P-201ENST00000390913 95 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 RNU1-78P-201ENST00000391248 165 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 MIR1287-201ENST00000408492 90 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 Y_RNA.617-201ENST00000410920 90 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 AC027119.1-201ENST00000440877 241 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 RPL39P39-201ENST00000455840 151 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 RNU6-772P-201ENST00000516042 105 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 SNORA31.4-201ENST00000516049 129 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 MIR6078-201ENST00000611069 100 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 MIR7974-201ENST00000615835 79 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 MIR4251-201ENST00000635819 61 ntBASIC1.19□□□□□ -2.22
TIMP3P35625 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
TIMP3P35625 Y_RNA.525-201ENST00000384570 113 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 RNU6-1319P-201ENST00000390855 104 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 RNU6-747P-201ENST00000390928 104 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 RNU6-241P-201ENST00000391148 104 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 RNA5SP261-201ENST00000410536 106 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 RNU6-177P-201ENST00000411257 104 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 RNU1-123P-201ENST00000458950 160 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 RNU7-45P-201ENST00000459460 63 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 RNU6-781P-201ENST00000516377 101 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 IGKV1-22-201ENST00000524313 326 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 MIR3152-201ENST00000579801 74 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 MIR3660-201ENST00000584845 100 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 MIR3192-201ENST00000584920 77 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 AL359881.1-201ENST00000602916 267 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 AC021443.1-201ENST00000604478 211 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 AL096861.1-201ENST00000610899 123 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
TIMP3P35625 AC021613.1-201ENST00000623880 111 ntBASIC1.18□□□□□ -2.22
TIMP3P35625 RNA5SP48-201ENST00000363969 126 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 RNA5SP205-201ENST00000364653 136 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 SNORD58C-201ENST00000365223 64 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 SNORD26-201ENST00000384147 75 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 RNU6-939P-201ENST00000384634 107 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 SNORA40.6-201ENST00000391153 128 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 MIR1263-201ENST00000408324 86 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 RPL30P7-201ENST00000479312 323 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 Y_RNA.712-201ENST00000517011 92 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 MIR4305-201ENST00000583252 102 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 AL020996.3-201ENST00000606617 222 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.17□□□□□ -2.22
TIMP3P35625 RNU7-164P-201ENST00000459221 62 ntBASIC1.16□□□□□ -2.22
TIMP3P35625 RNA5SP61-201ENST00000516453 100 ntBASIC1.16□□□□□ -2.22
TIMP3P35625 MIR3664-201ENST00000579074 99 ntBASIC1.16□□□□□ -2.22
TIMP3P35625 MIR548AO-201ENST00000579992 96 ntBASIC1.16□□□□□ -2.22
TIMP3P35625 AC025166.1-201ENST00000612411 163 ntBASIC1.16□□□□□ -2.22
TIMP3P35625 MIR6717-201ENST00000622747 73 ntBASIC1.16□□□□□ -2.22
TIMP3P35625 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
TIMP3P35625 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
TIMP3P35625 SNORA1.1-201ENST00000364671 133 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 Y_RNA.346-201ENST00000365385 112 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 RNU6-1190P-201ENST00000410811 104 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 RNA5SP144-201ENST00000410846 116 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 RNA5SP136-201ENST00000410906 107 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 Y_RNA.630-201ENST00000411370 108 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 AL022718.1-201ENST00000412004 84 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 HMGN1P33-201ENST00000432945 451 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 AC245517.4-201ENST00000448601 281 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 RNU6-893P-201ENST00000458841 100 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 AC004223.1-201ENST00000479840 271 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 RNA5SP445-201ENST00000515889 115 ntBASIC1.15□□□□□ -2.23
TIMP3P35625 RNY4P20-201ENST00000516678 93 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 188 ms