Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6-165P-201ENST00000517170 99 ntBASIC1.32□□□□□ -2.2
HOXD3P31249 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.32□□□□□ -2.2
HOXD3P31249 MIR4255-201ENST00000579351 72 ntBASIC1.32□□□□□ -2.2
HOXD3P31249 MIR4422-201ENST00000581938 83 ntBASIC1.32□□□□□ -2.2
HOXD3P31249 AC021443.1-201ENST00000604478 211 ntBASIC1.32□□□□□ -2.2
HOXD3P31249 MIR8055-201ENST00000610739 97 ntBASIC1.32□□□□□ -2.2
HOXD3P31249 AC021613.1-201ENST00000623880 111 ntBASIC1.32□□□□□ -2.2
HOXD3P31249 RNU6-1290P-201ENST00000362957 109 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 RNA5SP205-201ENST00000364653 136 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 SNORA70.7-201ENST00000384159 133 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 RNU6-1104P-201ENST00000384723 104 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 RNU6-1319P-201ENST00000390855 104 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 RNU6-747P-201ENST00000390928 104 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 RNU6-241P-201ENST00000391148 104 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 RNU6-177P-201ENST00000411257 104 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 AP1B1P2-201ENST00000416196 106 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 AL512326.2-201ENST00000426359 151 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 snoU13.16-201ENST00000459350 104 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 TRMT112P2-201ENST00000512910 132 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 RNU7-53P-201ENST00000516705 60 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 AC024614.2-201ENST00000577584 372 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 MIR3664-201ENST00000579074 99 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 MIR4305-201ENST00000583252 102 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 AL020996.3-201ENST00000606617 222 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 MIR6717-201ENST00000622747 73 ntBASIC1.31□□□□□ -2.2
HOXD3P31249 Y_RNA.118-201ENST00000363300 101 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 Y_RNA.171-201ENST00000363760 102 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 MT-TI-201ENST00000387365 69 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 MIR1302-7-201ENST00000408841 72 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.3□□□□□ -2.2
HOXD3P31249 POLR2J4-204ENST00000418424 324 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 RNU7-164P-201ENST00000459221 62 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.3□□□□□ -2.2
HOXD3P31249 RNU7-123P-201ENST00000515911 60 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 RNY4P20-201ENST00000516678 93 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 Y_RNA.712-201ENST00000517011 92 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 AL512310.8-201ENST00000550183 120 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 AC022523.2-201ENST00000561045 150 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 PRELID3BP2-201ENST00000605362 201 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 AL359821.1-201ENST00000605519 182 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 AL391516.1-201ENST00000554380 2449 ntBASIC1.3□□□□□ -2.2
HOXD3P31249 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
HOXD3P31249 Y_RNA.298-201ENST00000364960 107 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 Y_RNA.528-201ENST00000384575 108 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 MIRLET7F2-201ENST00000385277 83 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 RNA5SP144-201ENST00000410846 116 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 AL359881.1-201ENST00000602916 267 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 AL357312.1-201ENST00000603879 298 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 BX248123.2-201ENST00000606318 124 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 AC025166.1-201ENST00000612411 163 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
HOXD3P31249 MIR3914-2-201ENST00000637339 95 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 MTND5P18-201ENST00000445624 1801 ntBASIC1.29□□□□□ -2.2
HOXD3P31249 RNU6-1081P-201ENST00000384537 107 ntBASIC1.28□□□□□ -2.2
HOXD3P31249 RNU6-997P-201ENST00000384725 107 ntBASIC1.28□□□□□ -2.2
HOXD3P31249 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
HOXD3P31249 RNU6-735P-201ENST00000410612 107 ntBASIC1.28□□□□□ -2.2
HOXD3P31249 RNU1-98P-201ENST00000458992 160 ntBASIC1.28□□□□□ -2.2
HOXD3P31249 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.28□□□□□ -2.2
HOXD3P31249 DNAJC19P9-201ENST00000555084 351 ntBASIC1.28□□□□□ -2.2
HOXD3P31249 MIR548AI-201ENST00000579940 88 ntBASIC1.28□□□□□ -2.2
HOXD3P31249 AL512598.1-201ENST00000610158 273 ntBASIC1.28□□□□□ -2.2
HOXD3P31249 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.28□□□□□ -2.2
HOXD3P31249 SNORD33-201ENST00000362761 85 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 SNORA1.1-201ENST00000364671 133 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 RNU6-1065P-201ENST00000384513 106 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 SNORA67.5-201ENST00000391036 107 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 RNU6-602P-201ENST00000411155 105 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 RNU7-95P-201ENST00000459222 64 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 RN7SKP179-201ENST00000516126 217 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 SNORD33.1-201ENST00000516213 88 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 AC004812.1-201ENST00000540773 146 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 CYP3A52P-201ENST00000563326 91 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 SNORD53B-201ENST00000577887 78 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 MIR3152-201ENST00000579801 74 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 MIR8070-201ENST00000616510 88 ntBASIC1.27□□□□□ -2.21
HOXD3P31249 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.27□□□□□ -2.21
HOXD3P31249 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.27□□□□□ -2.21
HOXD3P31249 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
HOXD3P31249 SNORA22.1-201ENST00000362701 134 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 RNY1P10-201ENST00000363268 113 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 RNU1-42P-201ENST00000364033 160 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 Y_RNA.353-201ENST00000365440 108 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 Y_RNA.470-201ENST00000384307 117 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 Y_RNA.563-201ENST00000384707 108 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 MIR1185-1-201ENST00000408598 86 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 AC244023.1-201ENST00000426884 112 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 RPL39P39-201ENST00000455840 151 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 AC048334.1-201ENST00000477975 159 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 AL133373.1-201ENST00000497098 94 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 AC242498.1-201ENST00000604134 111 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 AL645939.4-201ENST00000604495 135 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 MIR6841-201ENST00000637129 72 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 Z97988.1-201ENST00000637697 135 ntBASIC1.26□□□□□ -2.21
HOXD3P31249 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
HOXD3P31249 SNORD48-201ENST00000364953 64 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 RNA5SP363-201ENST00000365072 115 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 SNORA25.9-201ENST00000365087 128 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 182.8 ms