Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 MIR302B-201ENST00000362188 73 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 SNORD33-201ENST00000362761 85 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 SNORD68-201ENST00000363214 84 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 U8.5-201ENST00000364528 136 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 Y_RNA.466-201ENST00000384294 113 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 RNU6-424P-201ENST00000384367 105 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 MIR450A2-201ENST00000385022 100 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 MIR660-201ENST00000385235 97 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 U8.17-201ENST00000391292 132 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 AL627390.1-201ENST00000396055 340 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 RNA5SP247-201ENST00000411181 105 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 AC107297.1-201ENST00000459991 176 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 SNORA31.4-201ENST00000516049 129 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 SNORA25.15-201ENST00000516487 89 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 MIR3683-201ENST00000580847 82 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 MIR4762-201ENST00000585261 75 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 AC095038.3-201ENST00000634439 195 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 AL162726.3-218ENST00000636401 95 ntBASIC1.81□□□□□ -2.12
TRIM38O00635 MIR302D-201ENST00000362275 68 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 Y_RNA.93-201ENST00000363066 109 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 SNORA16.1-201ENST00000364597 132 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 RNU4-16P-201ENST00000364737 141 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 RNU6-442P-201ENST00000383968 104 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 Y_RNA.593-201ENST00000410292 98 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 RPL31P63-201ENST00000422565 375 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 AC005908.1-201ENST00000468701 347 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 RPS29P11-201ENST00000496507 171 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 RNU6-1053P-201ENST00000515930 101 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 AC026421.1-201ENST00000519101 163 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 MIR3122-201ENST00000577243 73 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 MIR4305-201ENST00000583252 102 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 AC091932.4-201ENST00000623386 200 ntBASIC1.8□□□□□ -2.12
TRIM38O00635 Y_RNA.107-201ENST00000363190 121 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 SNORD14E-201ENST00000364009 85 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 Y_RNA.242-201ENST00000364473 110 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 RNU1-133P-201ENST00000364867 167 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 RNU6-820P-201ENST00000384273 107 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 MIR513A1-201ENST00000385138 129 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 MIR759-201ENST00000390224 91 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 MIR802-201ENST00000390235 94 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 RNU6-816P-201ENST00000390914 107 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 RNU6-1268P-201ENST00000391214 107 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 RNU6-1239P-201ENST00000391310 107 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 RPL39P25-201ENST00000449384 154 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 RNU6-893P-201ENST00000458841 100 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.79□□□□□ -2.12
TRIM38O00635 Y_RNA.714-201ENST00000517065 90 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 AP003484.1-201ENST00000530974 250 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 MIR4255-201ENST00000579351 72 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 MIR3163-201ENST00000581592 73 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 MIR4422-201ENST00000581938 83 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 MIR2052-201ENST00000636055 55 ntBASIC1.79□□□□□ -2.12
TRIM38O00635 RNY3P2-201ENST00000362918 102 ntBASIC1.78□□□□□ -2.12
TRIM38O00635 Y_RNA.290-201ENST00000364879 114 ntBASIC1.78□□□□□ -2.12
TRIM38O00635 Y_RNA.351-201ENST00000365436 96 ntBASIC1.78□□□□□ -2.12
TRIM38O00635 HSPE1P24-201ENST00000450782 238 ntBASIC1.78□□□□□ -2.12
TRIM38O00635 AC113410.1-201ENST00000505029 247 ntBASIC1.78□□□□□ -2.12
TRIM38O00635 Y_RNA.685-201ENST00000516532 108 ntBASIC1.78□□□□□ -2.12
TRIM38O00635 SNORD45.4-201ENST00000516629 73 ntBASIC1.78□□□□□ -2.12
TRIM38O00635 RNU6-250P-201ENST00000516958 103 ntBASIC1.78□□□□□ -2.12
TRIM38O00635 AC087741.2-201ENST00000619415 172 ntBASIC1.78□□□□□ -2.12
TRIM38O00635 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
TRIM38O00635 MIR378A-201ENST00000362177 66 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 RNU6-1084P-201ENST00000362498 107 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 RNU6-1099P-201ENST00000363533 107 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 snoU2-30.1-201ENST00000365012 70 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 RNU6-1134P-201ENST00000365156 101 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 SNORD78.1-201ENST00000390866 65 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 SNORA67.5-201ENST00000391036 107 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 AC245517.4-201ENST00000448601 281 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 SCARNA23-201ENST00000516060 130 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 RNA5SP168-201ENST00000516642 112 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 RNU7-6P-201ENST00000516845 62 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 RNU7-70P-201ENST00000516941 66 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 RNU6-1116P-201ENST00000517269 99 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 MIR4419B-201ENST00000577260 68 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 Y_RNA.773-201ENST00000607168 90 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 AC015726.2-201ENST00000620112 122 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 AC027279.3-201ENST00000625055 122 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 MIR1255B1-201ENST00000636325 63 ntBASIC1.77□□□□□ -2.13
TRIM38O00635 Y_RNA.17-201ENST00000362433 111 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 RNU6-228P-201ENST00000362700 106 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 Y_RNA.219-201ENST00000364232 113 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 SNORD48-201ENST00000364953 64 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 Y_RNA.494-201ENST00000384432 111 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 BTF3P4-201ENST00000418852 495 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 AL353813.1-201ENST00000440700 253 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 SNORA18.7-201ENST00000516910 131 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 DEFB131E-201ENST00000532329 154 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.76□□□□□ -2.13
TRIM38O00635 MIR3618-201ENST00000580330 88 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 MIR548Z-201ENST00000584743 97 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 snoU13.31-201ENST00000607291 104 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 SNORD3E-202ENST00000627253 216 ntBASIC1.76□□□□□ -2.13
TRIM38O00635 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.76□□□□□ -2.13
TRIM38O00635 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
TRIM38O00635 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.75□□□□□ -2.13
TRIM38O00635 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms