Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 U6.90-201ENST00000614007 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 U6.70-201ENST00000620287 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
LIMD1Q9UGP4 RNA5SP68-201ENST00000363885 119 ntBASIC2.95□□□□□ -1.94
LIMD1Q9UGP4 RNU1-112P-201ENST00000364401 164 ntBASIC2.95□□□□□ -1.94
LIMD1Q9UGP4 RNU6-342P-201ENST00000384521 104 ntBASIC2.95□□□□□ -1.94
LIMD1Q9UGP4 RNU6-1086P-201ENST00000410930 100 ntBASIC2.95□□□□□ -1.94
LIMD1Q9UGP4 RNU6-602P-201ENST00000411155 105 ntBASIC2.95□□□□□ -1.94
LIMD1Q9UGP4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.95□□□□□ -1.94
LIMD1Q9UGP4 RNU6-859P-201ENST00000362728 107 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 Y_RNA.467-201ENST00000384297 102 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 RNU6-242P-201ENST00000384359 107 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 AL138827.1-201ENST00000402666 306 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 RNU6-592P-201ENST00000411333 103 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 AL445685.2-201ENST00000422551 342 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 DEFB122-202ENST00000569013 197 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 SNORD53-201ENST00000579969 78 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 MIR6817-201ENST00000615588 66 ntBASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
LIMD1Q9UGP4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 SNORD114-10-201ENST00000363409 72 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 RNU6-865P-201ENST00000364772 107 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 SNORD38B-201ENST00000384690 67 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 MIR653-201ENST00000385279 96 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 SNORD78.1-201ENST00000390866 65 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 RNA5SP274-201ENST00000410484 108 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 AC004965.1-201ENST00000413033 213 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 AC090844.1-201ENST00000422019 156 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 RPS29P28-201ENST00000446439 141 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 AC234781.5-201ENST00000508429 271 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 MIR3935-201ENST00000583472 104 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 SNORD38B-202ENST00000625943 69 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 MIR4251-201ENST00000635819 61 ntBASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
LIMD1Q9UGP4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 SNORA3A-201ENST00000364113 130 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 MIR9-1-201ENST00000385198 89 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 AC109327.2-201ENST00000448339 378 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 snoU13.26-201ENST00000459452 105 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 RNU7-79P-201ENST00000516082 62 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 RNA5SP148-201ENST00000516527 94 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 RNU7-193P-201ENST00000516723 65 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 SNORA31.15-201ENST00000516771 132 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 MIR376B-201ENST00000614515 100 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 MIR3202-2-201ENST00000635980 79 ntBASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
LIMD1Q9UGP4 Y_RNA.140-201ENST00000363474 103 ntBASIC2.91□□□□□ -1.94
LIMD1Q9UGP4 RNU6-675P-201ENST00000384236 104 ntBASIC2.91□□□□□ -1.94
LIMD1Q9UGP4 SNORD38.2-201ENST00000384470 69 ntBASIC2.91□□□□□ -1.94
LIMD1Q9UGP4 AP004217.1-201ENST00000480579 346 ntBASIC2.91□□□□□ -1.94
LIMD1Q9UGP4 RNA5SP24-201ENST00000516478 95 ntBASIC2.91□□□□□ -1.94
LIMD1Q9UGP4 RNU6-826P-201ENST00000516827 104 ntBASIC2.91□□□□□ -1.94
LIMD1Q9UGP4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
LIMD1Q9UGP4 MIR194-1-201ENST00000384892 85 ntBASIC2.9□□□□□ -1.95
LIMD1Q9UGP4 MIR504-201ENST00000385065 83 ntBASIC2.9□□□□□ -1.95
LIMD1Q9UGP4 U8.15-201ENST00000390947 134 ntBASIC2.9□□□□□ -1.95
LIMD1Q9UGP4 AC022137.1-201ENST00000483735 151 ntBASIC2.9□□□□□ -1.95
LIMD1Q9UGP4 RN7SL633P-201ENST00000488974 297 ntBASIC2.9□□□□□ -1.95
LIMD1Q9UGP4 RNU6-1006P-201ENST00000516998 103 ntBASIC2.9□□□□□ -1.95
LIMD1Q9UGP4 MIR4524B-201ENST00000581569 115 ntBASIC2.9□□□□□ -1.95
LIMD1Q9UGP4 MIR4769-201ENST00000584126 77 ntBASIC2.9□□□□□ -1.95
LIMD1Q9UGP4 MIR4506-201ENST00000584693 77 ntBASIC2.9□□□□□ -1.95
LIMD1Q9UGP4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
LIMD1Q9UGP4 U8.2-201ENST00000363156 134 ntBASIC2.89□□□□□ -1.95
LIMD1Q9UGP4 RNA5SP48-201ENST00000363969 126 ntBASIC2.89□□□□□ -1.95
LIMD1Q9UGP4 RNU6-203P-201ENST00000384038 104 ntBASIC2.89□□□□□ -1.95
LIMD1Q9UGP4 UBL5P1-201ENST00000507979 193 ntBASIC2.89□□□□□ -1.95
LIMD1Q9UGP4 SNORD67.1-201ENST00000516618 108 ntBASIC2.89□□□□□ -1.95
LIMD1Q9UGP4 RNU2-19P-201ENST00000517288 84 ntBASIC2.89□□□□□ -1.95
LIMD1Q9UGP4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.89□□□□□ -1.95
LIMD1Q9UGP4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.88□□□□□ -1.95
LIMD1Q9UGP4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
LIMD1Q9UGP4 Y_RNA.190-201ENST00000363964 101 ntBASIC2.88□□□□□ -1.95
LIMD1Q9UGP4 SNORD58A-201ENST00000383875 65 ntBASIC2.88□□□□□ -1.95
LIMD1Q9UGP4 Y_RNA.448-201ENST00000384185 108 ntBASIC2.88□□□□□ -1.95
LIMD1Q9UGP4 SNORA67.4-201ENST00000384688 142 ntBASIC2.88□□□□□ -1.95
LIMD1Q9UGP4 RNA5SP385-201ENST00000515947 110 ntBASIC2.88□□□□□ -1.95
LIMD1Q9UGP4 MIR548AO-201ENST00000579992 96 ntBASIC2.88□□□□□ -1.95
LIMD1Q9UGP4 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
LIMD1Q9UGP4 Y_RNA.98-201ENST00000363109 102 ntBASIC2.87□□□□□ -1.95
LIMD1Q9UGP4 RNA5SP21-201ENST00000410917 96 ntBASIC2.87□□□□□ -1.95
LIMD1Q9UGP4 RPL39P39-201ENST00000455840 151 ntBASIC2.87□□□□□ -1.95
LIMD1Q9UGP4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.87□□□□□ -1.95
LIMD1Q9UGP4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.87□□□□□ -1.95
LIMD1Q9UGP4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
LIMD1Q9UGP4 RNA5SP212-201ENST00000391223 107 ntBASIC2.86□□□□□ -1.95
LIMD1Q9UGP4 RN7SKP123-201ENST00000410732 291 ntBASIC2.86□□□□□ -1.95
LIMD1Q9UGP4 RNA5SP344-201ENST00000411081 104 ntBASIC2.86□□□□□ -1.95
LIMD1Q9UGP4 RNU7-137P-201ENST00000516788 62 ntBASIC2.86□□□□□ -1.95
LIMD1Q9UGP4 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.86□□□□□ -1.95
LIMD1Q9UGP4 RNU6-90P-201ENST00000606352 106 ntBASIC2.86□□□□□ -1.95
LIMD1Q9UGP4 Y_RNA.247-201ENST00000364500 92 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms