Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TUG1_4.1-201ENST00000619464 181 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 AL596211.1-201ENST00000569873 2277 ntBASIC1.68□□□□□ -2.14
TDP1Q9NUW8 AC245517.4-201ENST00000448601 281 ntBASIC1.67□□□□□ -2.14
TDP1Q9NUW8 RNU2-11P-201ENST00000459191 187 ntBASIC1.67□□□□□ -2.14
TDP1Q9NUW8 MIR3664-201ENST00000579074 99 ntBASIC1.67□□□□□ -2.14
TDP1Q9NUW8 MIR3192-201ENST00000584920 77 ntBASIC1.67□□□□□ -2.14
TDP1Q9NUW8 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.67□□□□□ -2.14
TDP1Q9NUW8 AC011603.4-201ENST00000611325 277 ntBASIC1.67□□□□□ -2.14
TDP1Q9NUW8 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
TDP1Q9NUW8 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
TDP1Q9NUW8 RNU6-60P-201ENST00000364792 103 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 Y_RNA.294-201ENST00000364916 102 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 RPL30P7-201ENST00000479312 323 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 RNU5E-3P-201ENST00000515913 68 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 SNORA31.4-201ENST00000516049 129 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 RNU6-947P-201ENST00000516264 106 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 RNU6-406P-201ENST00000516470 107 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 RNU7-53P-201ENST00000516705 60 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 RNU6-789P-201ENST00000517105 102 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 AL512310.8-201ENST00000550183 120 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 AC024614.2-201ENST00000577584 372 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 Y_RNA.757-201ENST00000578934 114 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 MIR3121-201ENST00000579680 77 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 MIR4251-201ENST00000635819 61 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 AC132825.6-201ENST00000638861 357 ntBASIC1.66□□□□□ -2.14
TDP1Q9NUW8 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
TDP1Q9NUW8 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.65□□□□□ -2.14
TDP1Q9NUW8 MIR302B-201ENST00000362188 73 ntBASIC1.65□□□□□ -2.15
TDP1Q9NUW8 RNU1-42P-201ENST00000364033 160 ntBASIC1.65□□□□□ -2.15
TDP1Q9NUW8 SNORD48-201ENST00000364953 64 ntBASIC1.65□□□□□ -2.15
TDP1Q9NUW8 RNU6-81P-201ENST00000365608 104 ntBASIC1.65□□□□□ -2.15
TDP1Q9NUW8 RNU7-95P-201ENST00000459222 64 ntBASIC1.65□□□□□ -2.15
TDP1Q9NUW8 RNU6-971P-201ENST00000516920 106 ntBASIC1.65□□□□□ -2.15
TDP1Q9NUW8 AL645939.4-201ENST00000604495 135 ntBASIC1.65□□□□□ -2.15
TDP1Q9NUW8 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.64□□□□□ -2.15
TDP1Q9NUW8 RNU6-913P-201ENST00000390913 95 ntBASIC1.64□□□□□ -2.15
TDP1Q9NUW8 RNU6-321P-201ENST00000410912 106 ntBASIC1.64□□□□□ -2.15
TDP1Q9NUW8 RPL39P39-201ENST00000455840 151 ntBASIC1.64□□□□□ -2.15
TDP1Q9NUW8 RNU7-73P-201ENST00000458743 63 ntBASIC1.64□□□□□ -2.15
TDP1Q9NUW8 RNU6-1211P-201ENST00000459179 105 ntBASIC1.64□□□□□ -2.15
TDP1Q9NUW8 RNU6-165P-201ENST00000517170 99 ntBASIC1.64□□□□□ -2.15
TDP1Q9NUW8 RNU6-902P-201ENST00000517212 91 ntBASIC1.64□□□□□ -2.15
TDP1Q9NUW8 MIR4781-201ENST00000585250 76 ntBASIC1.64□□□□□ -2.15
TDP1Q9NUW8 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
TDP1Q9NUW8 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
TDP1Q9NUW8 Y_RNA.114-201ENST00000363265 113 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 RNA5SP48-201ENST00000363969 126 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 MIR539-201ENST00000365690 78 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 RNY1P6-201ENST00000384193 109 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 MIR517C-201ENST00000385103 95 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
TDP1Q9NUW8 SNORA67.6-201ENST00000391093 99 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 snoU13.25-201ENST00000458945 104 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 snoU13.16-201ENST00000459350 104 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 HSPE1P19-201ENST00000603327 295 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 AL359821.1-201ENST00000605519 182 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 BX248123.2-201ENST00000606318 124 ntBASIC1.63□□□□□ -2.15
TDP1Q9NUW8 AP000648.3-201ENST00000623539 4507 ntBASIC1.62□□□□□ -2.15
TDP1Q9NUW8 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
TDP1Q9NUW8 RNU6-349P-201ENST00000362402 107 ntBASIC1.62□□□□□ -2.15
TDP1Q9NUW8 Y_RNA.280-201ENST00000364765 112 ntBASIC1.62□□□□□ -2.15
TDP1Q9NUW8 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.62□□□□□ -2.15
TDP1Q9NUW8 RNU7-45P-201ENST00000459460 63 ntBASIC1.62□□□□□ -2.15
TDP1Q9NUW8 RNU6-113P-201ENST00000516653 101 ntBASIC1.62□□□□□ -2.15
TDP1Q9NUW8 MIR4285-201ENST00000581001 85 ntBASIC1.62□□□□□ -2.15
TDP1Q9NUW8 AL020996.3-201ENST00000606617 222 ntBASIC1.62□□□□□ -2.15
TDP1Q9NUW8 RNU6-1190P-201ENST00000410811 104 ntBASIC1.61□□□□□ -2.15
TDP1Q9NUW8 AC009474.2-201ENST00000451383 136 ntBASIC1.61□□□□□ -2.15
TDP1Q9NUW8 TRMT112P2-201ENST00000512910 132 ntBASIC1.61□□□□□ -2.15
TDP1Q9NUW8 MIR3122-201ENST00000577243 73 ntBASIC1.61□□□□□ -2.15
TDP1Q9NUW8 MIR548AO-201ENST00000579992 96 ntBASIC1.61□□□□□ -2.15
TDP1Q9NUW8 AC108081.1-201ENST00000604358 221 ntBASIC1.61□□□□□ -2.15
TDP1Q9NUW8 AL121890.5-201ENST00000620848 304 ntBASIC1.61□□□□□ -2.15
TDP1Q9NUW8 AL157777.2-201ENST00000258070 137 ntBASIC1.6□□□□□ -2.15
TDP1Q9NUW8 MIR337-201ENST00000362281 93 ntBASIC1.6□□□□□ -2.15
TDP1Q9NUW8 RNU4-16P-201ENST00000364737 141 ntBASIC1.6□□□□□ -2.15
TDP1Q9NUW8 RNU6-690P-201ENST00000365242 106 ntBASIC1.6□□□□□ -2.15
TDP1Q9NUW8 RNU6-959P-201ENST00000384671 107 ntBASIC1.6□□□□□ -2.15
TDP1Q9NUW8 RNA5SP247-201ENST00000411181 105 ntBASIC1.6□□□□□ -2.15
TDP1Q9NUW8 AL158147.1-201ENST00000443970 75 ntBASIC1.6□□□□□ -2.15
TDP1Q9NUW8 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.6□□□□□ -2.15
TDP1Q9NUW8 RNU6-240P-201ENST00000516098 97 ntBASIC1.6□□□□□ -2.15
TDP1Q9NUW8 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.6□□□□□ -2.15
TDP1Q9NUW8 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.6□□□□□ -2.15
TDP1Q9NUW8 RNU6-235P-201ENST00000362644 107 ntBASIC1.59□□□□□ -2.15
TDP1Q9NUW8 SNORA25.3-201ENST00000363205 127 ntBASIC1.59□□□□□ -2.15
TDP1Q9NUW8 HMGN1P33-201ENST00000432945 451 ntBASIC1.59□□□□□ -2.15
TDP1Q9NUW8 RN7SKP88-201ENST00000516847 250 ntBASIC1.59□□□□□ -2.15
TDP1Q9NUW8 SNORA31.24-201ENST00000517232 57 ntBASIC1.59□□□□□ -2.15
TDP1Q9NUW8 7SK.8-201ENST00000612110 250 ntBASIC1.59□□□□□ -2.15
TDP1Q9NUW8 7SK.11-201ENST00000615477 250 ntBASIC1.59□□□□□ -2.15
TDP1Q9NUW8 7SK.13-201ENST00000622040 250 ntBASIC1.59□□□□□ -2.15
TDP1Q9NUW8 AC021613.1-201ENST00000623880 111 ntBASIC1.59□□□□□ -2.15
TDP1Q9NUW8 RNY1P10-201ENST00000363268 113 ntBASIC1.58□□□□□ -2.16
TDP1Q9NUW8 Y_RNA.218-201ENST00000364218 104 ntBASIC1.58□□□□□ -2.16
TDP1Q9NUW8 RNA5SP363-201ENST00000365072 115 ntBASIC1.58□□□□□ -2.16
TDP1Q9NUW8 SNORA26.6-201ENST00000391256 115 ntBASIC1.58□□□□□ -2.16
TDP1Q9NUW8 MIR1323-201ENST00000408090 73 ntBASIC1.58□□□□□ -2.16
TDP1Q9NUW8 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.58□□□□□ -2.16
TDP1Q9NUW8 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms