Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 MIR3186-201ENST00000577404 85 ntBASIC3.34□□□□□ -1.87
LRCH3Q96II8 MIR664A-201ENST00000626086 82 ntBASIC3.34□□□□□ -1.87
LRCH3Q96II8 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LRCH3Q96II8 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
LRCH3Q96II8 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
LRCH3Q96II8 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.33□□□□□ -1.88
LRCH3Q96II8 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
LRCH3Q96II8 SNORD115-3-201ENST00000363100 82 ntBASIC3.33□□□□□ -1.88
LRCH3Q96II8 Y_RNA.226-201ENST00000364337 114 ntBASIC3.33□□□□□ -1.88
LRCH3Q96II8 MTND4LP19-201ENST00000403051 166 ntBASIC3.33□□□□□ -1.88
LRCH3Q96II8 SNORA3.2-201ENST00000408221 125 ntBASIC3.33□□□□□ -1.88
LRCH3Q96II8 MIR5094-201ENST00000578766 85 ntBASIC3.33□□□□□ -1.88
LRCH3Q96II8 AP000753.3-201ENST00000604083 169 ntBASIC3.33□□□□□ -1.88
LRCH3Q96II8 MIR622-201ENST00000638396 96 ntBASIC3.33□□□□□ -1.88
LRCH3Q96II8 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
LRCH3Q96II8 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LRCH3Q96II8 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
LRCH3Q96II8 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
LRCH3Q96II8 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LRCH3Q96II8 MIR22-201ENST00000362190 85 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 RNU6-800P-201ENST00000384473 103 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 RNU6-540P-201ENST00000384622 101 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 MIR591-201ENST00000385290 95 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 SNORD67-201ENST00000390833 111 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 RNU6-587P-201ENST00000391282 106 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 SNORD30.1-201ENST00000391309 70 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 MIR1289-2-201ENST00000408360 111 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 SNRPGP12-201ENST00000449481 213 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 AC133485.1-201ENST00000567176 124 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 AC090897.1-201ENST00000580909 226 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC3.32□□□□□ -1.88
LRCH3Q96II8 MIR1297-201ENST00000637311 77 ntBASIC3.32□□□□□ -1.88
LRCH3Q96II8 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LRCH3Q96II8 RNU6-811P-201ENST00000384069 107 ntBASIC3.31□□□□□ -1.88
LRCH3Q96II8 SNORD15B-201ENST00000384714 146 ntBASIC3.31□□□□□ -1.88
LRCH3Q96II8 MIR520H-201ENST00000385126 88 ntBASIC3.31□□□□□ -1.88
LRCH3Q96II8 AC087499.2-201ENST00000432861 149 ntBASIC3.31□□□□□ -1.88
LRCH3Q96II8 RN7SL330P-201ENST00000469709 307 ntBASIC3.31□□□□□ -1.88
LRCH3Q96II8 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.31□□□□□ -1.88
LRCH3Q96II8 CYP3A52P-201ENST00000563326 91 ntBASIC3.31□□□□□ -1.88
LRCH3Q96II8 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LRCH3Q96II8 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
LRCH3Q96II8 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.3□□□□□ -1.88
LRCH3Q96II8 AC104027.1-201ENST00000521887 300 ntBASIC3.3□□□□□ -1.88
LRCH3Q96II8 U6.111-201ENST00000636093 83 ntBASIC3.3□□□□□ -1.88
LRCH3Q96II8 ZNF658B-202ENST00000615961 3375 ntBASIC3.29□□□□□ -1.88
LRCH3Q96II8 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
LRCH3Q96II8 RNU5F-1-201ENST00000362507 117 ntBASIC3.29□□□□□ -1.88
LRCH3Q96II8 SNORA38-201ENST00000363946 132 ntBASIC3.29□□□□□ -1.88
LRCH3Q96II8 RNY1P2-201ENST00000364820 117 ntBASIC3.29□□□□□ -1.88
LRCH3Q96II8 SNORD77.2-201ENST00000391045 68 ntBASIC3.29□□□□□ -1.88
LRCH3Q96II8 AC005908.1-201ENST00000468701 347 ntBASIC3.29□□□□□ -1.88
LRCH3Q96II8 SNORA18.5-201ENST00000516616 101 ntBASIC3.29□□□□□ -1.88
LRCH3Q96II8 uc_338.1-201ENST00000612113 180 ntBASIC3.29□□□□□ -1.88
LRCH3Q96II8 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.29□□□□□ -1.88
LRCH3Q96II8 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.29□□□□□ -1.88
LRCH3Q96II8 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.29□□□□□ -1.88
LRCH3Q96II8 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LRCH3Q96II8 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
LRCH3Q96II8 Y_RNA.118-201ENST00000363300 101 ntBASIC3.28□□□□□ -1.88
LRCH3Q96II8 HMGN1P18-201ENST00000457642 277 ntBASIC3.28□□□□□ -1.88
LRCH3Q96II8 RPS29P12-201ENST00000460178 152 ntBASIC3.28□□□□□ -1.88
LRCH3Q96II8 SCARNA16.3-201ENST00000516595 184 ntBASIC3.28□□□□□ -1.88
LRCH3Q96II8 RNU6-850P-201ENST00000516934 103 ntBASIC3.28□□□□□ -1.88
LRCH3Q96II8 AC141846.1-201ENST00000568348 142 ntBASIC3.28□□□□□ -1.88
LRCH3Q96II8 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.28□□□□□ -1.88
LRCH3Q96II8 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
LRCH3Q96II8 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.27□□□□□ -1.89
LRCH3Q96II8 RNU1-58P-201ENST00000362413 163 ntBASIC3.27□□□□□ -1.89
LRCH3Q96II8 RNU1-109P-201ENST00000383960 147 ntBASIC3.27□□□□□ -1.89
LRCH3Q96II8 Y_RNA.596-201ENST00000410462 109 ntBASIC3.27□□□□□ -1.89
LRCH3Q96II8 RNA5SP229-201ENST00000410809 99 ntBASIC3.27□□□□□ -1.89
LRCH3Q96II8 SNORA74.3-201ENST00000517108 154 ntBASIC3.27□□□□□ -1.89
LRCH3Q96II8 MIR7153-201ENST00000637758 57 ntBASIC3.27□□□□□ -1.89
LRCH3Q96II8 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LRCH3Q96II8 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LRCH3Q96II8 SNORA72.6-201ENST00000384520 129 ntBASIC3.26□□□□□ -1.89
LRCH3Q96II8 SNORA67.4-201ENST00000384688 142 ntBASIC3.26□□□□□ -1.89
LRCH3Q96II8 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.26□□□□□ -1.89
LRCH3Q96II8 AC027119.1-201ENST00000440877 241 ntBASIC3.26□□□□□ -1.89
LRCH3Q96II8 RPS27P21-201ENST00000486977 252 ntBASIC3.26□□□□□ -1.89
LRCH3Q96II8 RNA5SP458-201ENST00000516188 119 ntBASIC3.26□□□□□ -1.89
LRCH3Q96II8 AC021506.2-201ENST00000612354 169 ntBASIC3.26□□□□□ -1.89
LRCH3Q96II8 AC008133.2-201ENST00000624540 351 ntBASIC3.26□□□□□ -1.89
LRCH3Q96II8 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.26□□□□□ -1.89
LRCH3Q96II8 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LRCH3Q96II8 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
LRCH3Q96II8 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.25□□□□□ -1.89
LRCH3Q96II8 RNU6-471P-201ENST00000383944 106 ntBASIC3.25□□□□□ -1.89
LRCH3Q96II8 MIR660-201ENST00000385235 97 ntBASIC3.25□□□□□ -1.89
LRCH3Q96II8 AC074348.1-201ENST00000426503 132 ntBASIC3.25□□□□□ -1.89
LRCH3Q96II8 SNORA64.4-201ENST00000516632 81 ntBASIC3.25□□□□□ -1.89
LRCH3Q96II8 RNU6-303P-201ENST00000517091 106 ntBASIC3.25□□□□□ -1.89
LRCH3Q96II8 RNU4ATAC9P-201ENST00000517146 126 ntBASIC3.25□□□□□ -1.89
LRCH3Q96II8 AL513423.1-201ENST00000621695 132 ntBASIC3.25□□□□□ -1.89
LRCH3Q96II8 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
LRCH3Q96II8 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
LRCH3Q96II8 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.25□□□□□ -1.89
LRCH3Q96II8 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
LRCH3Q96II8 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms