Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 MIR3129-201ENST00000581095 76 ntBASIC0.86□□□□□ -2.27
SHHQ15465 JPX_2.1-201ENST00000614161 69 ntBASIC0.86□□□□□ -2.27
SHHQ15465 AC012676.2-201ENST00000619258 186 ntBASIC0.86□□□□□ -2.27
SHHQ15465 AC015726.2-201ENST00000620112 122 ntBASIC0.86□□□□□ -2.27
SHHQ15465 Y_RNA.75-201ENST00000362927 97 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNU6-978P-201ENST00000364371 103 ntBASIC0.85□□□□□ -2.27
SHHQ15465 Y_RNA.294-201ENST00000364916 102 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNA5SP259-201ENST00000365541 109 ntBASIC0.85□□□□□ -2.27
SHHQ15465 SNORD116-18-201ENST00000383961 92 ntBASIC0.85□□□□□ -2.27
SHHQ15465 Y_RNA.506-201ENST00000384494 102 ntBASIC0.85□□□□□ -2.27
SHHQ15465 MIR660-201ENST00000385235 97 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNA5SP482-201ENST00000391269 118 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNU6-588P-201ENST00000410281 105 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNU6-1190P-201ENST00000410811 104 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNU6-847P-201ENST00000411115 108 ntBASIC0.85□□□□□ -2.27
SHHQ15465 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.85□□□□□ -2.27
SHHQ15465 AL138752.1-201ENST00000452964 351 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNU7-45P-201ENST00000459460 63 ntBASIC0.85□□□□□ -2.27
SHHQ15465 SNORD116-25-201ENST00000516517 92 ntBASIC0.85□□□□□ -2.27
SHHQ15465 Y_RNA.686-201ENST00000516548 134 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNU2-60P-201ENST00000517290 128 ntBASIC0.85□□□□□ -2.27
SHHQ15465 AL358944.1-201ENST00000528537 144 ntBASIC0.85□□□□□ -2.27
SHHQ15465 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.85□□□□□ -2.27
SHHQ15465 MIR3144-201ENST00000579460 79 ntBASIC0.85□□□□□ -2.27
SHHQ15465 MIR3192-201ENST00000584920 77 ntBASIC0.85□□□□□ -2.27
SHHQ15465 Z83818.1-201ENST00000603584 150 ntBASIC0.85□□□□□ -2.27
SHHQ15465 RNU4-84P-201ENST00000364200 139 ntBASIC0.84□□□□□ -2.27
SHHQ15465 Y_RNA.270-201ENST00000364693 104 ntBASIC0.84□□□□□ -2.27
SHHQ15465 Y_RNA.435-201ENST00000384095 112 ntBASIC0.84□□□□□ -2.27
SHHQ15465 SNORA25-201ENST00000384384 134 ntBASIC0.84□□□□□ -2.27
SHHQ15465 SNORD77.3-201ENST00000391113 65 ntBASIC0.84□□□□□ -2.27
SHHQ15465 RNU6-460P-201ENST00000391158 108 ntBASIC0.84□□□□□ -2.27
SHHQ15465 AL034345.1-201ENST00000407768 123 ntBASIC0.84□□□□□ -2.27
SHHQ15465 MIR548O-201ENST00000408583 114 ntBASIC0.84□□□□□ -2.27
SHHQ15465 AC090844.1-201ENST00000422019 156 ntBASIC0.84□□□□□ -2.27
SHHQ15465 RNU7-94P-201ENST00000459576 63 ntBASIC0.84□□□□□ -2.27
SHHQ15465 RNU7-41P-201ENST00000515917 61 ntBASIC0.84□□□□□ -2.27
SHHQ15465 RNU4-57P-201ENST00000515980 135 ntBASIC0.84□□□□□ -2.27
SHHQ15465 RNU6-693P-201ENST00000516134 107 ntBASIC0.84□□□□□ -2.27
SHHQ15465 SNORA18.7-201ENST00000516910 131 ntBASIC0.84□□□□□ -2.27
SHHQ15465 RNU6-182P-201ENST00000516970 105 ntBASIC0.84□□□□□ -2.27
SHHQ15465 MIR548AR-201ENST00000582191 57 ntBASIC0.84□□□□□ -2.27
SHHQ15465 AL513534.2-201ENST00000603836 250 ntBASIC0.84□□□□□ -2.27
SHHQ15465 AC072026.1-201ENST00000605023 201 ntBASIC0.84□□□□□ -2.27
SHHQ15465 AL096861.1-201ENST00000610899 123 ntBASIC0.84□□□□□ -2.27
SHHQ15465 AL391903.3-201ENST00000612158 163 ntBASIC0.84□□□□□ -2.27
SHHQ15465 AL513423.1-201ENST00000621695 132 ntBASIC0.84□□□□□ -2.27
SHHQ15465 AL589743.1-201ENST00000551932 2712 ntBASIC0.84□□□□□ -2.28
SHHQ15465 SNORA25.3-201ENST00000363205 127 ntBASIC0.83□□□□□ -2.28
SHHQ15465 RNU6-151P-201ENST00000364158 107 ntBASIC0.83□□□□□ -2.28
SHHQ15465 Y_RNA.272-201ENST00000364696 102 ntBASIC0.83□□□□□ -2.28
SHHQ15465 RNU4-11P-201ENST00000365287 132 ntBASIC0.83□□□□□ -2.28
SHHQ15465 RNU6-1138P-201ENST00000365359 106 ntBASIC0.83□□□□□ -2.28
SHHQ15465 RNU6-643P-201ENST00000384018 107 ntBASIC0.83□□□□□ -2.28
SHHQ15465 Y_RNA.441-201ENST00000384123 112 ntBASIC0.83□□□□□ -2.28
SHHQ15465 RNU6-125P-201ENST00000384505 107 ntBASIC0.83□□□□□ -2.28
SHHQ15465 Y_RNA.525-201ENST00000384570 113 ntBASIC0.83□□□□□ -2.28
SHHQ15465 Y_RNA.662-201ENST00000516028 97 ntBASIC0.83□□□□□ -2.28
SHHQ15465 RNU6-165P-201ENST00000517170 99 ntBASIC0.83□□□□□ -2.28
SHHQ15465 MIR3133-201ENST00000583157 78 ntBASIC0.83□□□□□ -2.28
SHHQ15465 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.83□□□□□ -2.28
SHHQ15465 Y_RNA.121-201ENST00000363309 113 ntBASIC0.82□□□□□ -2.28
SHHQ15465 Y_RNA.180-201ENST00000363867 113 ntBASIC0.82□□□□□ -2.28
SHHQ15465 SNORD14E-201ENST00000364009 85 ntBASIC0.82□□□□□ -2.28
SHHQ15465 snoU2-30.1-201ENST00000365012 70 ntBASIC0.82□□□□□ -2.28
SHHQ15465 RNU6-597P-201ENST00000365620 102 ntBASIC0.82□□□□□ -2.28
SHHQ15465 Y_RNA.432-201ENST00000384087 111 ntBASIC0.82□□□□□ -2.28
SHHQ15465 MIR19B1-201ENST00000384829 87 ntBASIC0.82□□□□□ -2.28
SHHQ15465 SNORD12-201ENST00000391002 90 ntBASIC0.82□□□□□ -2.28
SHHQ15465 RNA5SP496-201ENST00000391240 109 ntBASIC0.82□□□□□ -2.28
SHHQ15465 MIR891A-201ENST00000401237 79 ntBASIC0.82□□□□□ -2.28
SHHQ15465 RNU2-70P-201ENST00000410718 179 ntBASIC0.82□□□□□ -2.28
SHHQ15465 RNU6-1054P-201ENST00000411293 104 ntBASIC0.82□□□□□ -2.28
SHHQ15465 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.82□□□□□ -2.28
SHHQ15465 RNU7-197P-201ENST00000458836 62 ntBASIC0.82□□□□□ -2.28
SHHQ15465 SNORA25.12-201ENST00000516202 82 ntBASIC0.82□□□□□ -2.28
SHHQ15465 RNU6-1299P-201ENST00000516316 100 ntBASIC0.82□□□□□ -2.28
SHHQ15465 RNU6-197P-201ENST00000516680 100 ntBASIC0.82□□□□□ -2.28
SHHQ15465 AC004812.1-201ENST00000540773 146 ntBASIC0.82□□□□□ -2.28
SHHQ15465 AL022345.2-201ENST00000606307 135 ntBASIC0.82□□□□□ -2.28
SHHQ15465 AC098479.1-201ENST00000609225 154 ntBASIC0.82□□□□□ -2.28
SHHQ15465 RNU6-833P-201ENST00000363486 107 ntBASIC0.81□□□□□ -2.28
SHHQ15465 RNU6-103P-201ENST00000363686 107 ntBASIC0.81□□□□□ -2.28
SHHQ15465 RNU6-728P-201ENST00000365375 104 ntBASIC0.81□□□□□ -2.28
SHHQ15465 Y_RNA.555-201ENST00000384673 110 ntBASIC0.81□□□□□ -2.28
SHHQ15465 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.81□□□□□ -2.28
SHHQ15465 CYCTP-201ENST00000504253 315 ntBASIC0.81□□□□□ -2.28
SHHQ15465 UBL5P1-201ENST00000507979 193 ntBASIC0.81□□□□□ -2.28
SHHQ15465 RNU7-200P-201ENST00000516105 62 ntBASIC0.81□□□□□ -2.28
SHHQ15465 RNU6-947P-201ENST00000516264 106 ntBASIC0.81□□□□□ -2.28
SHHQ15465 RNU6-426P-201ENST00000516464 97 ntBASIC0.81□□□□□ -2.28
SHHQ15465 RNU7-121P-201ENST00000516604 62 ntBASIC0.81□□□□□ -2.28
SHHQ15465 MIR4431-201ENST00000579990 94 ntBASIC0.81□□□□□ -2.28
SHHQ15465 AC097639.2-201ENST00000603159 172 ntBASIC0.81□□□□□ -2.28
SHHQ15465 AC006441.5-201ENST00000612680 209 ntBASIC0.81□□□□□ -2.28
SHHQ15465 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
SHHQ15465 MIR342-201ENST00000362212 99 ntBASIC0.8□□□□□ -2.28
SHHQ15465 RNA5SP347-201ENST00000362445 119 ntBASIC0.8□□□□□ -2.28
SHHQ15465 Y_RNA.37-201ENST00000362606 108 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms