Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SNORD36C-201ENST00000516733 66 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 RN7SL793P-201ENST00000583259 296 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 AC097639.2-201ENST00000603159 172 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 AC134878.1-201ENST00000619901 243 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 MIR6513-201ENST00000621188 64 ntBASIC0.67□□□□□ -2.3
PTPN4P29074 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
PTPN4P29074 RNU6-580P-201ENST00000365159 107 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 Y_RNA.416-201ENST00000384014 113 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 SNORA27-201ENST00000384323 126 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 RNU6-125P-201ENST00000384505 107 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 RNU6-1228P-201ENST00000391014 107 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 RNU2-70P-201ENST00000410718 179 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 RNU2-38P-201ENST00000410856 79 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 RPS26P5-201ENST00000418544 335 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 AC090844.1-201ENST00000422019 156 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 AF228730.3-201ENST00000436691 102 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 AC004817.2-201ENST00000561794 651 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 AC011921.3-201ENST00000605540 361 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 MIR6779-201ENST00000617283 64 ntBASIC0.66□□□□□ -2.3
PTPN4P29074 Y_RNA.76-201ENST00000362931 109 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 Y_RNA.277-201ENST00000364754 102 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 MIR605-201ENST00000385078 83 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 RNU6-913P-201ENST00000390913 95 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.65□□□□□ -2.31
PTPN4P29074 RNU7-73P-201ENST00000458743 63 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 SNORD127-201ENST00000458892 86 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 RPS29P24-201ENST00000486345 171 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 RNU6-958P-201ENST00000516995 106 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 MIR4264-201ENST00000583520 66 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 AL442067.1-201ENST00000613261 223 ntBASIC0.65□□□□□ -2.31
PTPN4P29074 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.64□□□□□ -2.31
PTPN4P29074 Y_RNA.54-201ENST00000362766 105 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 Y_RNA.262-201ENST00000364641 102 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 RNU4-17P-201ENST00000365598 141 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
PTPN4P29074 Y_RNA.562-201ENST00000384695 113 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 RNU6-205P-201ENST00000390858 107 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 MIR1827-201ENST00000408549 66 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 MTCYBP9-201ENST00000431021 303 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 COX6CP6-201ENST00000490840 228 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 RNU6-327P-201ENST00000516270 127 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 AC004812.1-201ENST00000540773 146 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 AP000753.3-201ENST00000604083 169 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 7SK.10-201ENST00000621414 298 ntBASIC0.64□□□□□ -2.31
PTPN4P29074 Y_RNA.133-201ENST00000363428 110 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 Y_RNA.199-201ENST00000364014 102 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 Y_RNA.288-201ENST00000364854 92 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 RNY1P4-201ENST00000384595 115 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 MIR548H3-201ENST00000408771 118 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 RNU6-733P-201ENST00000410759 104 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 MTND2P23-201ENST00000422990 651 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 AC244023.1-201ENST00000426884 112 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 SCARNA15.1-201ENST00000516384 125 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 RNA5SP121-201ENST00000516537 101 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 RNU7-53P-201ENST00000516705 60 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 AC242498.1-201ENST00000604134 111 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 MIR8055-201ENST00000610739 97 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 Z97988.1-201ENST00000637697 135 ntBASIC0.63□□□□□ -2.31
PTPN4P29074 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.62□□□□□ -2.31
PTPN4P29074 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
PTPN4P29074 MIR1-1-201ENST00000362147 71 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 Y_RNA.23-201ENST00000362496 106 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 RNU6-369P-201ENST00000362515 102 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 Y_RNA.292-201ENST00000364904 97 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 RNU6-1189P-201ENST00000383958 107 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 Y_RNA.410-201ENST00000383992 113 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 Y_RNA.440-201ENST00000384120 114 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 MIR568-201ENST00000385036 95 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.62□□□□□ -2.31
PTPN4P29074 snoU13.21-201ENST00000459368 105 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 RNU6-561P-201ENST00000516222 102 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 Z83818.1-201ENST00000603584 150 ntBASIC0.62□□□□□ -2.31
PTPN4P29074 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
PTPN4P29074 SNORA1-201ENST00000384107 130 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 Y_RNA.556-201ENST00000384677 113 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 SNORD77.3-201ENST00000391113 65 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 MIR936-201ENST00000401264 98 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 SNORD99-201ENST00000408612 74 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 RNU7-96P-201ENST00000459535 64 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 RNU6-998P-201ENST00000515894 101 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 Y_RNA.668-201ENST00000516233 93 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 AC023934.1-201ENST00000574529 2389 ntBASIC0.61□□□□□ -2.31
PTPN4P29074 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.6□□□□□ -2.31
PTPN4P29074 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
PTPN4P29074 RNA5SP347-201ENST00000362445 119 ntBASIC0.6□□□□□ -2.31
PTPN4P29074 RNU6-103P-201ENST00000363686 107 ntBASIC0.6□□□□□ -2.31
PTPN4P29074 Y_RNA.205-201ENST00000364128 113 ntBASIC0.6□□□□□ -2.31
PTPN4P29074 RNU6-728P-201ENST00000365375 104 ntBASIC0.6□□□□□ -2.31
PTPN4P29074 RNU4-43P-201ENST00000410628 137 ntBASIC0.6□□□□□ -2.31
PTPN4P29074 HMGN1P33-201ENST00000432945 451 ntBASIC0.6□□□□□ -2.31
PTPN4P29074 AL138752.1-201ENST00000452964 351 ntBASIC0.6□□□□□ -2.31
PTPN4P29074 MIR376A2-201ENST00000636782 80 ntBASIC0.6□□□□□ -2.31
PTPN4P29074 Y_RNA.162-201ENST00000363683 102 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 RNY4P28-201ENST00000365281 93 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 Y_RNA.542-201ENST00000384641 111 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 SNORD38B-201ENST00000384690 67 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 SNORD105-201ENST00000386910 85 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 MIR548I3-201ENST00000408378 149 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 SNORD83.1-201ENST00000411362 77 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 182.1 ms