Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-447P-201ENST00000410293 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNU6-1118P-201ENST00000410382 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNU6-1076P-201ENST00000410397 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNU6-355P-201ENST00000410427 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNU6-791P-201ENST00000410467 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNU6-705P-201ENST00000410601 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNU6-1100P-201ENST00000410691 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNU6-860P-201ENST00000410860 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNU6-1217P-201ENST00000411276 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNU6-785P-201ENST00000411324 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 AC022018.1-201ENST00000430685 241 ntBASIC2.73□□□□□ -1.97
MSX1P28360 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2.73□□□□□ -1.97
MSX1P28360 SPINT5P-201ENST00000448174 155 ntBASIC2.73□□□□□ -1.97
MSX1P28360 snoU13.27-201ENST00000459278 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 AC099513.1-201ENST00000490423 301 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNA5SP356-201ENST00000515972 94 ntBASIC2.73□□□□□ -1.97
MSX1P28360 RNA5SP481-201ENST00000516814 122 ntBASIC2.73□□□□□ -1.97
MSX1P28360 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.73□□□□□ -1.97
MSX1P28360 MIR3162-201ENST00000581818 82 ntBASIC2.73□□□□□ -1.97
MSX1P28360 AC104984.5-201ENST00000586878 94 ntBASIC2.73□□□□□ -1.97
MSX1P28360 U6.90-201ENST00000614007 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 U6.70-201ENST00000620287 104 ntBASIC2.73□□□□□ -1.97
MSX1P28360 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
MSX1P28360 SNORD38.2-201ENST00000384470 69 ntBASIC2.72□□□□□ -1.97
MSX1P28360 RNU6-1321P-201ENST00000390905 107 ntBASIC2.72□□□□□ -1.97
MSX1P28360 EEF1A1P41-201ENST00000414667 207 ntBASIC2.72□□□□□ -1.97
MSX1P28360 UBBP3-201ENST00000445497 241 ntBASIC2.72□□□□□ -1.97
MSX1P28360 RNU7-137P-201ENST00000516788 62 ntBASIC2.72□□□□□ -1.97
MSX1P28360 GTF3AP2-201ENST00000557014 266 ntBASIC2.72□□□□□ -1.97
MSX1P28360 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
MSX1P28360 MIR424-201ENST00000362227 98 ntBASIC2.71□□□□□ -1.98
MSX1P28360 RNU6-112P-201ENST00000363599 104 ntBASIC2.71□□□□□ -1.98
MSX1P28360 Y_RNA.173-201ENST00000363776 113 ntBASIC2.71□□□□□ -1.98
MSX1P28360 SNORD115-27-201ENST00000364430 82 ntBASIC2.71□□□□□ -1.98
MSX1P28360 RNU6-296P-201ENST00000384608 107 ntBASIC2.71□□□□□ -1.98
MSX1P28360 MIR518A2-201ENST00000384966 87 ntBASIC2.71□□□□□ -1.98
MSX1P28360 RNU6-613P-201ENST00000410412 108 ntBASIC2.71□□□□□ -1.98
MSX1P28360 RNU6-602P-201ENST00000411155 105 ntBASIC2.71□□□□□ -1.98
MSX1P28360 AL139132.1-201ENST00000431587 344 ntBASIC2.71□□□□□ -1.98
MSX1P28360 RNU7-26P-201ENST00000458980 63 ntBASIC2.71□□□□□ -1.98
MSX1P28360 AC105081.1-201ENST00000617727 106 ntBASIC2.71□□□□□ -1.98
MSX1P28360 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.71□□□□□ -1.98
MSX1P28360 AC007318.2-201ENST00000620999 243 ntBASIC2.71□□□□□ -1.98
MSX1P28360 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.71□□□□□ -1.98
MSX1P28360 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
MSX1P28360 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.7□□□□□ -1.98
MSX1P28360 Y_RNA.98-201ENST00000363109 102 ntBASIC2.7□□□□□ -1.98
MSX1P28360 RNU6-457P-201ENST00000363999 107 ntBASIC2.7□□□□□ -1.98
MSX1P28360 SNORA9.2-201ENST00000365361 133 ntBASIC2.7□□□□□ -1.98
MSX1P28360 RNU6-524P-201ENST00000384270 107 ntBASIC2.7□□□□□ -1.98
MSX1P28360 HMGN2P35-201ENST00000412164 270 ntBASIC2.7□□□□□ -1.98
MSX1P28360 RPL31P63-201ENST00000422565 375 ntBASIC2.7□□□□□ -1.98
MSX1P28360 RN7SKP132-201ENST00000516001 208 ntBASIC2.7□□□□□ -1.98
MSX1P28360 RNU7-43P-201ENST00000516554 64 ntBASIC2.7□□□□□ -1.98
MSX1P28360 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.7□□□□□ -1.98
MSX1P28360 AL513043.2-201ENST00000573941 143 ntBASIC2.7□□□□□ -1.98
MSX1P28360 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
MSX1P28360 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
MSX1P28360 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSX1P28360 VTRNA1-1-201ENST00000363120 99 ntBASIC2.69□□□□□ -1.98
MSX1P28360 RNA5SP138-201ENST00000365098 114 ntBASIC2.69□□□□□ -1.98
MSX1P28360 MIR519C-201ENST00000385053 87 ntBASIC2.69□□□□□ -1.98
MSX1P28360 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
MSX1P28360 RNU7-48P-201ENST00000458875 63 ntBASIC2.69□□□□□ -1.98
MSX1P28360 AC139453.2-201ENST00000487255 133 ntBASIC2.69□□□□□ -1.98
MSX1P28360 AC093729.1-201ENST00000513074 128 ntBASIC2.69□□□□□ -1.98
MSX1P28360 AC012676.2-201ENST00000619258 186 ntBASIC2.69□□□□□ -1.98
MSX1P28360 AC008133.2-201ENST00000624540 351 ntBASIC2.69□□□□□ -1.98
MSX1P28360 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSX1P28360 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSX1P28360 AC093831.2-201ENST00000624393 3427 ntBASIC2.68□□□□□ -1.98
MSX1P28360 AL023284.1-201ENST00000403956 276 ntBASIC2.68□□□□□ -1.98
MSX1P28360 AC011753.1-201ENST00000451001 220 ntBASIC2.68□□□□□ -1.98
MSX1P28360 MTND5P40-201ENST00000559945 246 ntBASIC2.68□□□□□ -1.98
MSX1P28360 CYP3A52P-201ENST00000563326 91 ntBASIC2.68□□□□□ -1.98
MSX1P28360 MIR4712-201ENST00000583750 82 ntBASIC2.68□□□□□ -1.98
MSX1P28360 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
MSX1P28360 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
MSX1P28360 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
MSX1P28360 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
MSX1P28360 RNU6-480P-201ENST00000384332 107 ntBASIC2.67□□□□□ -1.98
MSX1P28360 MIR181B2-201ENST00000385004 89 ntBASIC2.67□□□□□ -1.98
MSX1P28360 RNA5SP501-201ENST00000410990 112 ntBASIC2.67□□□□□ -1.98
MSX1P28360 AC105272.1-201ENST00000438604 198 ntBASIC2.67□□□□□ -1.98
MSX1P28360 RN7SL75P-201ENST00000461926 281 ntBASIC2.67□□□□□ -1.98
MSX1P28360 AC234781.5-201ENST00000508429 271 ntBASIC2.67□□□□□ -1.98
MSX1P28360 MIR4764-201ENST00000580680 88 ntBASIC2.67□□□□□ -1.98
MSX1P28360 SNORD14A-201ENST00000606526 91 ntBASIC2.67□□□□□ -1.98
MSX1P28360 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
MSX1P28360 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.66□□□□□ -1.98
MSX1P28360 SNORA38-201ENST00000363946 132 ntBASIC2.66□□□□□ -1.98
MSX1P28360 AP001362.1-201ENST00000625165 124 ntBASIC2.66□□□□□ -1.98
MSX1P28360 MIR6733-201ENST00000635723 61 ntBASIC2.66□□□□□ -1.98
MSX1P28360 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
MSX1P28360 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.66□□□□□ -1.98
MSX1P28360 HMGN2P39-201ENST00000398005 273 ntBASIC2.65□□□□□ -1.99
MSX1P28360 MIR4319-201ENST00000577285 85 ntBASIC2.65□□□□□ -1.99
MSX1P28360 AC020891.4-201ENST00000605745 93 ntBASIC2.65□□□□□ -1.99
MSX1P28360 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.65□□□□□ -1.99
MSX1P28360 AC080100.1-201ENST00000624239 5356 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 174.6 ms