Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 snoU13.16-201ENST00000459350 104 ntBASIC1.84□□□□□ -2.11
CBX4O00257 Y_RNA.651-201ENST00000459380 103 ntBASIC1.84□□□□□ -2.11
CBX4O00257 RN7SL274P-201ENST00000492268 272 ntBASIC1.84□□□□□ -2.11
CBX4O00257 RNU6-947P-201ENST00000516264 106 ntBASIC1.84□□□□□ -2.11
CBX4O00257 SNORA25.15-201ENST00000516487 89 ntBASIC1.84□□□□□ -2.11
CBX4O00257 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.84□□□□□ -2.11
CBX4O00257 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.83□□□□□ -2.12
CBX4O00257 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
CBX4O00257 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
CBX4O00257 RNA5SP48-201ENST00000363969 126 ntBASIC1.83□□□□□ -2.12
CBX4O00257 Y_RNA.294-201ENST00000364916 102 ntBASIC1.83□□□□□ -2.12
CBX4O00257 RNU1-78P-201ENST00000391248 165 ntBASIC1.83□□□□□ -2.12
CBX4O00257 RNA5SP261-201ENST00000410536 106 ntBASIC1.83□□□□□ -2.12
CBX4O00257 AL606753.1-201ENST00000427435 87 ntBASIC1.83□□□□□ -2.12
CBX4O00257 snoU13.31-201ENST00000607291 104 ntBASIC1.83□□□□□ -2.12
CBX4O00257 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.83□□□□□ -2.12
CBX4O00257 MIR4251-201ENST00000635819 61 ntBASIC1.83□□□□□ -2.12
CBX4O00257 RNU6-508P-201ENST00000363231 103 ntBASIC1.82□□□□□ -2.12
CBX4O00257 SNORD113-1-201ENST00000365321 69 ntBASIC1.82□□□□□ -2.12
CBX4O00257 RNU6-80P-201ENST00000384195 107 ntBASIC1.82□□□□□ -2.12
CBX4O00257 SUMO2P12-201ENST00000405924 140 ntBASIC1.82□□□□□ -2.12
CBX4O00257 RNU4-62P-201ENST00000410125 130 ntBASIC1.82□□□□□ -2.12
CBX4O00257 AL158147.1-201ENST00000443970 75 ntBASIC1.82□□□□□ -2.12
CBX4O00257 AC245517.4-201ENST00000448601 281 ntBASIC1.82□□□□□ -2.12
CBX4O00257 RNA5SP445-201ENST00000515889 115 ntBASIC1.82□□□□□ -2.12
CBX4O00257 RNU7-41P-201ENST00000515917 61 ntBASIC1.82□□□□□ -2.12
CBX4O00257 RNU6-62P-201ENST00000516526 102 ntBASIC1.82□□□□□ -2.12
CBX4O00257 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CBX4O00257 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.81□□□□□ -2.12
CBX4O00257 AC133485.4-201ENST00000561835 220 ntBASIC1.81□□□□□ -2.12
CBX4O00257 AC138907.4-201ENST00000570107 226 ntBASIC1.81□□□□□ -2.12
CBX4O00257 MIR4419B-201ENST00000577260 68 ntBASIC1.81□□□□□ -2.12
CBX4O00257 MIR4303-201ENST00000581299 66 ntBASIC1.81□□□□□ -2.12
CBX4O00257 AC012493.3-201ENST00000604494 112 ntBASIC1.81□□□□□ -2.12
CBX4O00257 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
CBX4O00257 RNU6-349P-201ENST00000362402 107 ntBASIC1.8□□□□□ -2.12
CBX4O00257 AC008267.6-201ENST00000441664 139 ntBASIC1.8□□□□□ -2.12
CBX4O00257 RNU6-240P-201ENST00000516098 97 ntBASIC1.8□□□□□ -2.12
CBX4O00257 DNAJC19P9-201ENST00000555084 351 ntBASIC1.8□□□□□ -2.12
CBX4O00257 MIR3152-201ENST00000579801 74 ntBASIC1.8□□□□□ -2.12
CBX4O00257 RNU6-235P-201ENST00000362644 107 ntBASIC1.79□□□□□ -2.12
CBX4O00257 Y_RNA.71-201ENST00000362892 104 ntBASIC1.79□□□□□ -2.12
CBX4O00257 Y_RNA.280-201ENST00000364765 112 ntBASIC1.79□□□□□ -2.12
CBX4O00257 Y_RNA.508-201ENST00000384502 114 ntBASIC1.79□□□□□ -2.12
CBX4O00257 RNU6-321P-201ENST00000410912 106 ntBASIC1.79□□□□□ -2.12
CBX4O00257 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.79□□□□□ -2.12
CBX4O00257 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.79□□□□□ -2.12
CBX4O00257 RN7SKP179-201ENST00000516126 217 ntBASIC1.79□□□□□ -2.12
CBX4O00257 RNU6-1234P-201ENST00000516877 103 ntBASIC1.79□□□□□ -2.12
CBX4O00257 MIR3664-201ENST00000579074 99 ntBASIC1.79□□□□□ -2.12
CBX4O00257 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CBX4O00257 MIR337-201ENST00000362281 93 ntBASIC1.78□□□□□ -2.12
CBX4O00257 RNU4-16P-201ENST00000364737 141 ntBASIC1.78□□□□□ -2.12
CBX4O00257 SNORD116-14-201ENST00000383894 92 ntBASIC1.78□□□□□ -2.12
CBX4O00257 SNORD116-17-201ENST00000383929 92 ntBASIC1.78□□□□□ -2.12
CBX4O00257 SNORD116-15-201ENST00000384445 92 ntBASIC1.78□□□□□ -2.12
CBX4O00257 SNORD116-19-201ENST00000384729 92 ntBASIC1.78□□□□□ -2.12
CBX4O00257 AL512310.8-201ENST00000550183 120 ntBASIC1.78□□□□□ -2.12
CBX4O00257 AL096861.1-201ENST00000610899 123 ntBASIC1.78□□□□□ -2.12
CBX4O00257 AL137067.1-201ENST00000615933 120 ntBASIC1.78□□□□□ -2.12
CBX4O00257 AL121890.5-201ENST00000620848 304 ntBASIC1.78□□□□□ -2.12
CBX4O00257 AC021613.1-201ENST00000623880 111 ntBASIC1.78□□□□□ -2.12
CBX4O00257 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.78□□□□□ -2.12
CBX4O00257 Y_RNA.218-201ENST00000364218 104 ntBASIC1.77□□□□□ -2.13
CBX4O00257 RNU6-913P-201ENST00000390913 95 ntBASIC1.77□□□□□ -2.13
CBX4O00257 RNU6-893P-201ENST00000458841 100 ntBASIC1.77□□□□□ -2.13
CBX4O00257 RNU6-1061P-201ENST00000516530 99 ntBASIC1.77□□□□□ -2.13
CBX4O00257 MIR3618-201ENST00000580330 88 ntBASIC1.77□□□□□ -2.13
CBX4O00257 MIR3683-201ENST00000580847 82 ntBASIC1.77□□□□□ -2.13
CBX4O00257 MIR3192-201ENST00000584920 77 ntBASIC1.77□□□□□ -2.13
CBX4O00257 AC021443.1-201ENST00000604478 211 ntBASIC1.77□□□□□ -2.13
CBX4O00257 AL020996.3-201ENST00000606617 222 ntBASIC1.77□□□□□ -2.13
CBX4O00257 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.77□□□□□ -2.13
CBX4O00257 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CBX4O00257 Y_RNA.127-201ENST00000363386 109 ntBASIC1.76□□□□□ -2.13
CBX4O00257 SNORA1.1-201ENST00000364671 133 ntBASIC1.76□□□□□ -2.13
CBX4O00257 Y_RNA.366-201ENST00000365540 102 ntBASIC1.76□□□□□ -2.13
CBX4O00257 Y_RNA.466-201ENST00000384294 113 ntBASIC1.76□□□□□ -2.13
CBX4O00257 RNU6-22P-201ENST00000384355 107 ntBASIC1.76□□□□□ -2.13
CBX4O00257 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
CBX4O00257 RNU6-1319P-201ENST00000390855 104 ntBASIC1.76□□□□□ -2.13
CBX4O00257 RNU6-747P-201ENST00000390928 104 ntBASIC1.76□□□□□ -2.13
CBX4O00257 RNU6-241P-201ENST00000391148 104 ntBASIC1.76□□□□□ -2.13
CBX4O00257 RNU6-177P-201ENST00000411257 104 ntBASIC1.76□□□□□ -2.13
CBX4O00257 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.76□□□□□ -2.13
CBX4O00257 AP1B1P2-201ENST00000416196 106 ntBASIC1.76□□□□□ -2.13
CBX4O00257 RN7SKP19-201ENST00000516016 252 ntBASIC1.76□□□□□ -2.13
CBX4O00257 RNU6-902P-201ENST00000517212 91 ntBASIC1.76□□□□□ -2.13
CBX4O00257 AC108081.1-201ENST00000604358 221 ntBASIC1.76□□□□□ -2.13
CBX4O00257 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.75□□□□□ -2.13
CBX4O00257 RPS27P16-201ENST00000425758 201 ntBASIC1.75□□□□□ -2.13
CBX4O00257 AC009474.2-201ENST00000451383 136 ntBASIC1.75□□□□□ -2.13
CBX4O00257 RNU7-45P-201ENST00000459460 63 ntBASIC1.75□□□□□ -2.13
CBX4O00257 RNU6-1333P-201ENST00000516162 93 ntBASIC1.75□□□□□ -2.13
CBX4O00257 RN7SKP88-201ENST00000516847 250 ntBASIC1.75□□□□□ -2.13
CBX4O00257 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.75□□□□□ -2.13
CBX4O00257 AC024614.2-201ENST00000577584 372 ntBASIC1.75□□□□□ -2.13
CBX4O00257 HSPE1P19-201ENST00000603327 295 ntBASIC1.75□□□□□ -2.13
CBX4O00257 7SK.8-201ENST00000612110 250 ntBASIC1.75□□□□□ -2.13
CBX4O00257 7SK.11-201ENST00000615477 250 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms