Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNA5SP100-201ENST00000410903 110 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 RNA5SP59-201ENST00000410922 110 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 MIR1270-201ENST00000459320 83 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 AC108729.3-201ENST00000513484 108 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 5S_rRNA.3-201ENST00000517021 110 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 5S_rRNA.19-201ENST00000612131 110 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 5S_rRNA.18-201ENST00000621941 110 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 AC093831.2-201ENST00000624393 3427 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 MIR494-201ENST00000349529 81 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 Y_RNA.17-201ENST00000362433 111 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 RNU6-457P-201ENST00000363999 107 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 RNA5SP380-201ENST00000517190 98 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 AC107016.2-201ENST00000547968 190 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 MIR4777-201ENST00000583710 86 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 AC007318.2-201ENST00000620999 243 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 AC008133.2-201ENST00000624540 351 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 Z97988.1-201ENST00000637697 135 ntBASIC3.03□□□□□ -1.92
LIMD1Q9UGP4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
LIMD1Q9UGP4 AC073325.2-201ENST00000339545 159 ntBASIC3.02□□□□□ -1.93
LIMD1Q9UGP4 RNU6-887P-201ENST00000410660 100 ntBASIC3.02□□□□□ -1.93
LIMD1Q9UGP4 AC245047.7-201ENST00000440265 293 ntBASIC3.02□□□□□ -1.93
LIMD1Q9UGP4 AC008413.1-201ENST00000511864 177 ntBASIC3.02□□□□□ -1.93
LIMD1Q9UGP4 RNU7-2P-201ENST00000516096 62 ntBASIC3.02□□□□□ -1.93
LIMD1Q9UGP4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.02□□□□□ -1.93
LIMD1Q9UGP4 SNORD14A-201ENST00000606526 91 ntBASIC3.02□□□□□ -1.93
LIMD1Q9UGP4 AL161431.1-201ENST00000618966 4205 ntBASIC3.01□□□□□ -1.93
LIMD1Q9UGP4 Y_RNA.219-201ENST00000364232 113 ntBASIC3.01□□□□□ -1.93
LIMD1Q9UGP4 Y_RNA.593-201ENST00000410292 98 ntBASIC3.01□□□□□ -1.93
LIMD1Q9UGP4 RNA5SP450-201ENST00000411206 102 ntBASIC3.01□□□□□ -1.93
LIMD1Q9UGP4 RNU6-322P-201ENST00000516010 103 ntBASIC3.01□□□□□ -1.93
LIMD1Q9UGP4 Y_RNA.685-201ENST00000516532 108 ntBASIC3.01□□□□□ -1.93
LIMD1Q9UGP4 MIR4764-201ENST00000580680 88 ntBASIC3.01□□□□□ -1.93
LIMD1Q9UGP4 MIR1245B-201ENST00000636115 69 ntBASIC3.01□□□□□ -1.93
LIMD1Q9UGP4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
LIMD1Q9UGP4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3□□□□□ -1.93
LIMD1Q9UGP4 HMGN1P33-201ENST00000432945 451 ntBASIC3□□□□□ -1.93
LIMD1Q9UGP4 AC003982.1-202ENST00000469928 248 ntBASIC3□□□□□ -1.93
LIMD1Q9UGP4 RNU7-35P-201ENST00000517174 62 ntBASIC3□□□□□ -1.93
LIMD1Q9UGP4 CYP3A52P-201ENST00000563326 91 ntBASIC3□□□□□ -1.93
LIMD1Q9UGP4 AC022254.1-201ENST00000567857 235 ntBASIC3□□□□□ -1.93
LIMD1Q9UGP4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC3□□□□□ -1.93
LIMD1Q9UGP4 IGLL4P-201ENST00000614590 133 ntBASIC3□□□□□ -1.93
LIMD1Q9UGP4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC3□□□□□ -1.93
LIMD1Q9UGP4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 SNORA70B-201ENST00000384210 135 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 MIR520C-201ENST00000385005 87 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 MIR887-201ENST00000401258 79 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 AC011753.1-201ENST00000451001 220 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 RN7SL20P-201ENST00000488827 297 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 AC092185.1-201ENST00000491371 97 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 RNU1-41P-201ENST00000516161 162 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 RNU1-48P-201ENST00000516400 162 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 SNORA31.17-201ENST00000516953 127 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 SNORA31.25-201ENST00000517242 134 ntBASIC2.99□□□□□ -1.93
LIMD1Q9UGP4 RNY1P1-201ENST00000364372 112 ntBASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 RNU2-40P-201ENST00000410833 196 ntBASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 AL513328.1-201ENST00000446460 224 ntBASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 RNU6-237P-201ENST00000515985 71 ntBASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 RNU6-162P-201ENST00000516228 103 ntBASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 MIR8065-201ENST00000620577 100 ntBASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 MIR7843-201ENST00000622274 79 ntBASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 AC091304.10-201ENST00000641554 121 ntBASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
LIMD1Q9UGP4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 RNY1P10-201ENST00000363268 113 ntBASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 SNORD116-10-201ENST00000363791 102 ntBASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 SNORA9.2-201ENST00000365361 133 ntBASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 SNORD116-22-201ENST00000384430 92 ntBASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 RNU6-1275P-201ENST00000391087 107 ntBASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
LIMD1Q9UGP4 SNORD38.1-201ENST00000363863 68 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-573P-201ENST00000383938 106 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU1-52P-201ENST00000384190 164 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-813P-201ENST00000384691 107 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 MIR206-201ENST00000384872 86 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-447P-201ENST00000410293 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-1118P-201ENST00000410382 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-1076P-201ENST00000410397 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-355P-201ENST00000410427 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-791P-201ENST00000410467 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-705P-201ENST00000410601 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-1100P-201ENST00000410691 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-860P-201ENST00000410860 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-1217P-201ENST00000411276 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-785P-201ENST00000411324 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 BTF3P4-201ENST00000418852 495 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-917P-201ENST00000516294 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 RNU6-638P-201ENST00000516582 104 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 MIR548Z-201ENST00000584743 97 ntBASIC2.96□□□□□ -1.94
LIMD1Q9UGP4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms