Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 MIR5094-201ENST00000578766 85 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 RNU6-94P-201ENST00000607728 107 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 AC022513.1-201ENST00000624512 117 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL4A3Q01955 MIRLET7C-201ENST00000362160 84 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 Y_RNA.30-201ENST00000362572 97 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 RNU6-833P-201ENST00000363486 107 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 SNORA38-201ENST00000363946 132 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A3Q01955 STAG3L5P-204ENST00000443759 179 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 MIR4255-201ENST00000579351 72 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 MIR4305-201ENST00000583252 102 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 AL078603.1-201ENST00000603824 313 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 MIR8081-201ENST00000611533 95 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 AC022709.1-201ENST00000615967 87 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 AP001318.4-201ENST00000616637 121 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 AC015726.2-201ENST00000620112 122 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 AC091932.4-201ENST00000623386 200 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL4A3Q01955 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.98□□□□□ -2.09
COL4A3Q01955 Y_RNA.163-201ENST00000363702 113 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 RNA5SP160-201ENST00000364866 120 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 U8.6-201ENST00000364939 135 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 Y_RNA.323-201ENST00000365157 109 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 SNORA27-201ENST00000384323 126 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 RNU6-1104P-201ENST00000384723 104 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 MT-TI-201ENST00000387365 69 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 AC069257.2-201ENST00000441819 155 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 RNU6-717P-201ENST00000459076 104 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 RPL39P34-201ENST00000477141 156 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 RNU6-830P-201ENST00000516353 107 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 SNORA31.10-201ENST00000516482 106 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 HSPE1P19-201ENST00000603327 295 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 AC069114.2-201ENST00000604699 304 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 AC084768.2-201ENST00000622736 221 ntBASIC1.98□□□□□ -2.09
COL4A3Q01955 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL4A3Q01955 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
COL4A3Q01955 MIR302B-201ENST00000362188 73 ntBASIC1.97□□□□□ -2.09
COL4A3Q01955 RNU6-766P-201ENST00000362478 107 ntBASIC1.97□□□□□ -2.09
COL4A3Q01955 Y_RNA.205-201ENST00000364128 113 ntBASIC1.97□□□□□ -2.09
COL4A3Q01955 Y_RNA.362-201ENST00000365518 110 ntBASIC1.97□□□□□ -2.09
COL4A3Q01955 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.97□□□□□ -2.09
COL4A3Q01955 RNU7-12P-201ENST00000516030 62 ntBASIC1.97□□□□□ -2.09
COL4A3Q01955 AC068339.1-201ENST00000526965 141 ntBASIC1.97□□□□□ -2.09
COL4A3Q01955 MIR5089-201ENST00000580047 84 ntBASIC1.97□□□□□ -2.09
COL4A3Q01955 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.97□□□□□ -2.09
COL4A3Q01955 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL4A3Q01955 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
COL4A3Q01955 Y_RNA.328-201ENST00000365208 113 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 Y_RNA.348-201ENST00000365403 103 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 RNU6-905P-201ENST00000384434 107 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 RNU6-950P-201ENST00000384651 107 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
COL4A3Q01955 U8.16-201ENST00000391279 133 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 AL034345.1-201ENST00000407768 123 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 SNX2P2-201ENST00000424553 323 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 RNU7-26P-201ENST00000458980 63 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 RNU7-123P-201ENST00000515911 60 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 MIR5009-201ENST00000578736 100 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 AC078899.2-201ENST00000595282 212 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 AP000648.3-201ENST00000623539 4507 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 Y_RNA.241-201ENST00000364470 117 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 RNU6-392P-201ENST00000364926 101 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 Y_RNA.354-201ENST00000365448 111 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 Y_RNA.494-201ENST00000384432 111 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 RNU1-148P-201ENST00000384472 162 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.96□□□□□ -2.1
COL4A3Q01955 RNA5SP476-201ENST00000516613 103 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 RNA5SP168-201ENST00000516642 112 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 SNORA31.26-201ENST00000517250 137 ntBASIC1.96□□□□□ -2.1
COL4A3Q01955 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.95□□□□□ -2.1
COL4A3Q01955 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
COL4A3Q01955 MIR1267-201ENST00000408723 78 ntBASIC1.95□□□□□ -2.1
COL4A3Q01955 RNU2-7P-201ENST00000410794 178 ntBASIC1.95□□□□□ -2.1
COL4A3Q01955 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.95□□□□□ -2.1
COL4A3Q01955 AC107297.1-201ENST00000459991 176 ntBASIC1.95□□□□□ -2.1
COL4A3Q01955 SNORA40.13-201ENST00000516379 120 ntBASIC1.95□□□□□ -2.1
COL4A3Q01955 RNA5SP137-201ENST00000516833 135 ntBASIC1.95□□□□□ -2.1
COL4A3Q01955 MIR3683-201ENST00000580847 82 ntBASIC1.95□□□□□ -2.1
COL4A3Q01955 AL035470.1-201ENST00000622571 220 ntBASIC1.95□□□□□ -2.1
COL4A3Q01955 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC1.95□□□□□ -2.1
COL4A3Q01955 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.94□□□□□ -2.1
COL4A3Q01955 RNU2-35P-201ENST00000516446 142 ntBASIC1.94□□□□□ -2.1
COL4A3Q01955 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.94□□□□□ -2.1
COL4A3Q01955 Y_RNA.344-201ENST00000365381 112 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 Y_RNA.370-201ENST00000365589 108 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 AL035398.1-201ENST00000430869 322 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 UBBP3-201ENST00000445497 241 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 RNU2-11P-201ENST00000459191 187 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 RNU7-181P-201ENST00000517234 74 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 IGLV3-17-201ENST00000519099 244 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 AC004812.1-201ENST00000540773 146 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 MIR3163-201ENST00000581592 73 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.93□□□□□ -2.1
COL4A3Q01955 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-34-201ENST00000362441 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-12-201ENST00000362583 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-29-201ENST00000362834 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-9-201ENST00000362912 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-21-201ENST00000362963 81 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 191.7 ms