Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU7-96P-201ENST00000459535 64 ntBASIC1.93□□□□□ -2.1
CBX4O00257 RNU6-922P-201ENST00000516753 99 ntBASIC1.93□□□□□ -2.1
CBX4O00257 SCARNA15-202ENST00000516881 127 ntBASIC1.93□□□□□ -2.1
CBX4O00257 RNA5SP364-201ENST00000516938 78 ntBASIC1.93□□□□□ -2.1
CBX4O00257 AL357312.1-201ENST00000603879 298 ntBASIC1.93□□□□□ -2.1
CBX4O00257 MIR342-201ENST00000362212 99 ntBASIC1.92□□□□□ -2.1
CBX4O00257 RNU1-133P-201ENST00000364867 167 ntBASIC1.92□□□□□ -2.1
CBX4O00257 RNU6-1065P-201ENST00000384513 106 ntBASIC1.92□□□□□ -2.1
CBX4O00257 MIR520C-201ENST00000385005 87 ntBASIC1.92□□□□□ -2.1
CBX4O00257 SNX2P2-201ENST00000424553 323 ntBASIC1.92□□□□□ -2.1
CBX4O00257 AC079140.2-201ENST00000506193 142 ntBASIC1.92□□□□□ -2.1
CBX4O00257 AC008834.1-201ENST00000511612 175 ntBASIC1.92□□□□□ -2.1
CBX4O00257 RNU2-60P-201ENST00000517290 128 ntBASIC1.92□□□□□ -2.1
CBX4O00257 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.92□□□□□ -2.1
CBX4O00257 MIR4498-201ENST00000577599 66 ntBASIC1.92□□□□□ -2.1
CBX4O00257 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.92□□□□□ -2.1
CBX4O00257 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.92□□□□□ -2.1
CBX4O00257 SNORD28B-201ENST00000390993 75 ntBASIC1.91□□□□□ -2.1
CBX4O00257 RNU7-67P-201ENST00000459003 62 ntBASIC1.91□□□□□ -2.1
CBX4O00257 RNU5E-3P-201ENST00000515913 68 ntBASIC1.91□□□□□ -2.1
CBX4O00257 RNU6-1053P-201ENST00000515930 101 ntBASIC1.91□□□□□ -2.1
CBX4O00257 RNA5SP182-201ENST00000516064 82 ntBASIC1.91□□□□□ -2.1
CBX4O00257 RNA5SP236-201ENST00000516169 116 ntBASIC1.91□□□□□ -2.1
CBX4O00257 MIR8081-201ENST00000611533 95 ntBASIC1.91□□□□□ -2.1
CBX4O00257 uc_338.20-201ENST00000621563 178 ntBASIC1.91□□□□□ -2.1
CBX4O00257 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CBX4O00257 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
CBX4O00257 MIR302B-201ENST00000362188 73 ntBASIC1.9□□□□□ -2.11
CBX4O00257 Y_RNA.226-201ENST00000364337 114 ntBASIC1.9□□□□□ -2.11
CBX4O00257 SNORD1A-201ENST00000364968 72 ntBASIC1.9□□□□□ -2.11
CBX4O00257 RNU6-81P-201ENST00000365608 104 ntBASIC1.9□□□□□ -2.11
CBX4O00257 Y_RNA.537-201ENST00000384626 109 ntBASIC1.9□□□□□ -2.11
CBX4O00257 RPS29P29-201ENST00000456396 171 ntBASIC1.9□□□□□ -2.11
CBX4O00257 RNU6-1211P-201ENST00000459179 105 ntBASIC1.9□□□□□ -2.11
CBX4O00257 SNORD13-201ENST00000459299 104 ntBASIC1.9□□□□□ -2.11
CBX4O00257 RNU6-998P-201ENST00000515894 101 ntBASIC1.9□□□□□ -2.11
CBX4O00257 SNORD111.1-201ENST00000516421 86 ntBASIC1.9□□□□□ -2.11
CBX4O00257 RNU7-53P-201ENST00000516705 60 ntBASIC1.9□□□□□ -2.11
CBX4O00257 MIR3937-201ENST00000580135 106 ntBASIC1.9□□□□□ -2.11
CBX4O00257 MIR4764-201ENST00000580680 88 ntBASIC1.9□□□□□ -2.11
CBX4O00257 AL022345.2-201ENST00000606307 135 ntBASIC1.9□□□□□ -2.11
CBX4O00257 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
CBX4O00257 AC243994.1-201ENST00000618627 109 ntBASIC1.9□□□□□ -2.11
CBX4O00257 AL596211.1-201ENST00000569873 2277 ntBASIC1.9□□□□□ -2.11
CBX4O00257 MIR302D-201ENST00000362275 68 ntBASIC1.89□□□□□ -2.11
CBX4O00257 SNORA51.10-201ENST00000384418 136 ntBASIC1.89□□□□□ -2.11
CBX4O00257 Y_RNA.494-201ENST00000384432 111 ntBASIC1.89□□□□□ -2.11
CBX4O00257 SNORD41-201ENST00000386967 70 ntBASIC1.89□□□□□ -2.11
CBX4O00257 AL035398.1-201ENST00000430869 322 ntBASIC1.89□□□□□ -2.11
CBX4O00257 AC019176.1-201ENST00000518519 225 ntBASIC1.89□□□□□ -2.11
CBX4O00257 MIR4781-201ENST00000585250 76 ntBASIC1.89□□□□□ -2.11
CBX4O00257 MIR4791-201ENST00000607666 84 ntBASIC1.89□□□□□ -2.11
CBX4O00257 GHRLOS.1-201ENST00000610995 70 ntBASIC1.89□□□□□ -2.11
CBX4O00257 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.89□□□□□ -2.11
CBX4O00257 AC091932.4-201ENST00000623386 200 ntBASIC1.89□□□□□ -2.11
CBX4O00257 AC008133.2-201ENST00000624540 351 ntBASIC1.89□□□□□ -2.11
CBX4O00257 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CBX4O00257 RNU6-309P-201ENST00000364573 106 ntBASIC1.88□□□□□ -2.11
CBX4O00257 MIR570-201ENST00000384917 97 ntBASIC1.88□□□□□ -2.11
CBX4O00257 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CBX4O00257 MIR1287-201ENST00000408492 90 ntBASIC1.88□□□□□ -2.11
CBX4O00257 RNU6-113P-201ENST00000516653 101 ntBASIC1.88□□□□□ -2.11
CBX4O00257 RNU6-971P-201ENST00000516920 106 ntBASIC1.88□□□□□ -2.11
CBX4O00257 RNU6-250P-201ENST00000516958 103 ntBASIC1.88□□□□□ -2.11
CBX4O00257 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.88□□□□□ -2.11
CBX4O00257 RNA5SP190-201ENST00000365222 118 ntBASIC1.87□□□□□ -2.11
CBX4O00257 RNU2-11P-201ENST00000459191 187 ntBASIC1.87□□□□□ -2.11
CBX4O00257 RNU2-13P-201ENST00000515909 113 ntBASIC1.87□□□□□ -2.11
CBX4O00257 RNU6-958P-201ENST00000516995 106 ntBASIC1.87□□□□□ -2.11
CBX4O00257 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.87□□□□□ -2.11
CBX4O00257 MIR3121-201ENST00000579680 77 ntBASIC1.87□□□□□ -2.11
CBX4O00257 MIR3935-201ENST00000583472 104 ntBASIC1.87□□□□□ -2.11
CBX4O00257 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
CBX4O00257 SNORA16.1-201ENST00000364597 132 ntBASIC1.86□□□□□ -2.11
CBX4O00257 SNORA24-201ENST00000384096 131 ntBASIC1.86□□□□□ -2.11
CBX4O00257 RNU6-959P-201ENST00000384671 107 ntBASIC1.86□□□□□ -2.11
CBX4O00257 MIR9-3-201ENST00000385084 90 ntBASIC1.86□□□□□ -2.11
CBX4O00257 RNU2-40P-201ENST00000410833 196 ntBASIC1.86□□□□□ -2.11
CBX4O00257 RPL39P39-201ENST00000455840 151 ntBASIC1.86□□□□□ -2.11
CBX4O00257 RPL30P7-201ENST00000479312 323 ntBASIC1.86□□□□□ -2.11
CBX4O00257 MIR4422-201ENST00000581938 83 ntBASIC1.86□□□□□ -2.11
CBX4O00257 U2.22-201ENST00000636441 106 ntBASIC1.86□□□□□ -2.11
CBX4O00257 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CBX4O00257 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
CBX4O00257 Y_RNA.118-201ENST00000363300 101 ntBASIC1.85□□□□□ -2.11
CBX4O00257 RNU6-647P-201ENST00000364243 107 ntBASIC1.85□□□□□ -2.11
CBX4O00257 RNY1P6-201ENST00000384193 109 ntBASIC1.85□□□□□ -2.11
CBX4O00257 SNORA19-201ENST00000384737 128 ntBASIC1.85□□□□□ -2.11
CBX4O00257 MIR934-201ENST00000401241 83 ntBASIC1.85□□□□□ -2.11
CBX4O00257 AC027119.1-201ENST00000440877 241 ntBASIC1.85□□□□□ -2.11
CBX4O00257 RPS29P11-201ENST00000496507 171 ntBASIC1.85□□□□□ -2.11
CBX4O00257 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.85□□□□□ -2.11
CBX4O00257 AC084768.2-201ENST00000622736 221 ntBASIC1.85□□□□□ -2.11
CBX4O00257 AL157777.2-201ENST00000258070 137 ntBASIC1.84□□□□□ -2.11
CBX4O00257 MIR378A-201ENST00000362177 66 ntBASIC1.84□□□□□ -2.11
CBX4O00257 Y_RNA.114-201ENST00000363265 113 ntBASIC1.84□□□□□ -2.11
CBX4O00257 RNU6-690P-201ENST00000365242 106 ntBASIC1.84□□□□□ -2.11
CBX4O00257 RNU6-1117P-201ENST00000384525 104 ntBASIC1.84□□□□□ -2.11
CBX4O00257 BTF3P4-201ENST00000418852 495 ntBASIC1.84□□□□□ -2.11
CBX4O00257 RNU7-73P-201ENST00000458743 63 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms