Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.272-201ENST00000364696 102 ntBASIC2.34□□□□□ -2.03
CCDC9Q9Y3X0 RNA5SP37-201ENST00000365420 130 ntBASIC2.34□□□□□ -2.03
CCDC9Q9Y3X0 Y_RNA.580-201ENST00000391004 95 ntBASIC2.34□□□□□ -2.03
CCDC9Q9Y3X0 SNRPGP14-201ENST00000435400 219 ntBASIC2.34□□□□□ -2.03
CCDC9Q9Y3X0 RMST_2.1-201ENST00000617263 136 ntBASIC2.34□□□□□ -2.03
CCDC9Q9Y3X0 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
CCDC9Q9Y3X0 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-103P-201ENST00000363686 107 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.343-201ENST00000365354 112 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 SNORD116-18-201ENST00000383961 92 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.540-201ENST00000384638 111 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.571-201ENST00000384753 98 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 MT-TT-201ENST00000387460 66 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-1228P-201ENST00000391014 107 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 AL606845.1-201ENST00000404881 255 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 RNU5E-9P-201ENST00000411164 104 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-947P-201ENST00000516264 106 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 SNORD111.1-201ENST00000516421 86 ntBASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC9Q9Y3X0 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.32□□□□□ -2.04
CCDC9Q9Y3X0 SNORA26-201ENST00000391286 122 ntBASIC2.32□□□□□ -2.04
CCDC9Q9Y3X0 RNU2-51P-201ENST00000410708 197 ntBASIC2.32□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-1299P-201ENST00000516316 100 ntBASIC2.32□□□□□ -2.04
CCDC9Q9Y3X0 SNORA18.7-201ENST00000516910 131 ntBASIC2.32□□□□□ -2.04
CCDC9Q9Y3X0 CYP3A52P-201ENST00000563326 91 ntBASIC2.32□□□□□ -2.04
CCDC9Q9Y3X0 SNORD53B-201ENST00000577887 78 ntBASIC2.32□□□□□ -2.04
CCDC9Q9Y3X0 AL645939.4-201ENST00000604495 135 ntBASIC2.32□□□□□ -2.04
CCDC9Q9Y3X0 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.7-201ENST00000362352 102 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 RNU1-42P-201ENST00000364033 160 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-312P-201ENST00000364629 107 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-1130P-201ENST00000365434 107 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-449P-201ENST00000383914 107 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.497-201ENST00000384447 98 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 RNU2-55P-201ENST00000411146 174 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-479P-201ENST00000516348 105 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-62P-201ENST00000516526 102 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-453P-201ENST00000516819 85 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 SNORA74.3-201ENST00000517108 154 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.31□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.23-201ENST00000362496 106 ntBASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.75-201ENST00000362927 97 ntBASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.121-201ENST00000363309 113 ntBASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.400-201ENST00000383963 111 ntBASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-22P-201ENST00000384355 107 ntBASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.488-201ENST00000384403 102 ntBASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 SCARNA8-201ENST00000515924 131 ntBASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-365P-201ENST00000517113 106 ntBASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 MIR8065-201ENST00000620577 100 ntBASIC2.3□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.357-201ENST00000365487 109 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.432-201ENST00000384087 111 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-959P-201ENST00000384671 107 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 RNU2-70P-201ENST00000410718 179 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.622-201ENST00000411091 108 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-313P-201ENST00000516317 112 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-830P-201ENST00000516353 107 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 RNA5SP102-201ENST00000516865 106 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 RNU2-4P-201ENST00000606190 192 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 AC091895.1-201ENST00000624494 256 ntBASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC9Q9Y3X0 SNORA7.1-201ENST00000363750 139 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 RNA5SP325-201ENST00000363756 130 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 RNU4-84P-201ENST00000364200 139 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 RNA5SP138-201ENST00000365098 114 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.412-201ENST00000384001 104 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.486-201ENST00000384398 107 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 Y_RNA.568-201ENST00000384742 113 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 MIR520C-201ENST00000385005 87 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 MIR548O-201ENST00000408583 114 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 SNRPGP13-201ENST00000442212 177 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 SNORD123-201ENST00000459473 70 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 RNU1-92P-201ENST00000517017 135 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 AL157834.3-201ENST00000615543 103 ntBASIC2.28□□□□□ -2.04
CCDC9Q9Y3X0 RNU6-1290P-201ENST00000362957 109 ntBASIC2.27□□□□□ -2.05
CCDC9Q9Y3X0 Y_RNA.182-201ENST00000363880 111 ntBASIC2.27□□□□□ -2.05
CCDC9Q9Y3X0 Y_RNA.215-201ENST00000364204 112 ntBASIC2.27□□□□□ -2.05
CCDC9Q9Y3X0 SNORA16.1-201ENST00000364597 132 ntBASIC2.27□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-728P-201ENST00000365375 104 ntBASIC2.27□□□□□ -2.05
CCDC9Q9Y3X0 SNORA79-201ENST00000408376 140 ntBASIC2.27□□□□□ -2.05
CCDC9Q9Y3X0 RNU7-43P-201ENST00000516554 64 ntBASIC2.27□□□□□ -2.05
CCDC9Q9Y3X0 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC9Q9Y3X0 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-1154P-201ENST00000391001 104 ntBASIC2.26□□□□□ -2.05
CCDC9Q9Y3X0 SEPT7P4-201ENST00000437076 306 ntBASIC2.26□□□□□ -2.05
CCDC9Q9Y3X0 Y_RNA.666-201ENST00000516187 112 ntBASIC2.26□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-165P-201ENST00000517170 99 ntBASIC2.26□□□□□ -2.05
CCDC9Q9Y3X0 MIR3122-201ENST00000577243 73 ntBASIC2.26□□□□□ -2.05
CCDC9Q9Y3X0 Y_RNA.81-201ENST00000362997 102 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-275P-201ENST00000364910 107 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 Y_RNA.586-201ENST00000391146 98 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-735P-201ENST00000410612 107 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 RNU1-123P-201ENST00000458950 160 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 SNORD116-25-201ENST00000516517 92 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 241.5 ms