Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU6-1319P-201ENST00000390855 104 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-747P-201ENST00000390928 104 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-241P-201ENST00000391148 104 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 AL034345.1-201ENST00000407768 123 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-177P-201ENST00000411257 104 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 RNU7-67P-201ENST00000459003 62 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 RNU7-12P-201ENST00000516030 62 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 AC107016.2-201ENST00000547968 190 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 ELOCP29-201ENST00000588193 334 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 MIR4791-201ENST00000607666 84 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 AC007336.1-201ENST00000576365 3828 ntBASIC2.64□□□□□ -1.99
HIF3AQ9Y2N7 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-219P-201ENST00000364728 107 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-979P-201ENST00000383896 107 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 MIR128-1-201ENST00000384921 82 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 MIR597-201ENST00000384968 97 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 SNORA48.2-201ENST00000390926 124 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 SNORA11.2-201ENST00000408318 127 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 RPS29P6-201ENST00000438196 145 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 RNA5SP168-201ENST00000516642 112 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 MIR376B-201ENST00000614515 100 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 SCARNA15.3-201ENST00000626315 122 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 SCARNA4.1-201ENST00000628597 123 ntBASIC2.63□□□□□ -1.99
HIF3AQ9Y2N7 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 Y_RNA.96-201ENST00000363092 109 ntBASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-833P-201ENST00000363486 107 ntBASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 Y_RNA.370-201ENST00000365589 108 ntBASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 Y_RNA.377-201ENST00000365644 108 ntBASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 RNY1P4-201ENST00000384595 115 ntBASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 RNA5SP344-201ENST00000411081 104 ntBASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 AC093850.1-201ENST00000454121 251 ntBASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 MIR4668-201ENST00000582284 70 ntBASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 AL442644.1-201ENST00000454390 3105 ntBASIC2.62□□□□□ -1.99
HIF3AQ9Y2N7 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 SNORA1.1-201ENST00000364671 133 ntBASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 MIR1283-2-201ENST00000408621 87 ntBASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 MIR3152-201ENST00000579801 74 ntBASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 MIR4658-201ENST00000584344 65 ntBASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 MIR6841-201ENST00000637129 72 ntBASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HIF3AQ9Y2N7 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 SNORD115-2-201ENST00000362842 82 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 Y_RNA.191-201ENST00000363972 113 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 Y_RNA.247-201ENST00000364500 92 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 SNORD115-20-201ENST00000365099 82 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-851P-201ENST00000384565 107 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 MIR512-1-201ENST00000384913 84 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 RNA5SP465-201ENST00000391195 109 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-1018P-201ENST00000516577 106 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 AC096720.1-201ENST00000604441 183 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 Z82195.2-201ENST00000612348 18351 ntBASIC2.6□□□□□ -1.99
HIF3AQ9Y2N7 AC080100.1-201ENST00000624239 5356 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-1313P-201ENST00000362622 102 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 SNORA1.2-201ENST00000365189 134 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 SNORA70.7-201ENST00000384159 133 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-913P-201ENST00000390913 95 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 SNORD28B-201ENST00000390993 75 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 SNORA26.6-201ENST00000391256 115 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 Y_RNA.611-201ENST00000410682 108 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 RNU2-40P-201ENST00000410833 196 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 Y_RNA.620-201ENST00000411009 88 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 HMGN2P3-201ENST00000433603 273 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 HMGN2P5-201ENST00000436882 273 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 SNORA59A-201ENST00000459326 152 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 AC108729.3-201ENST00000513484 108 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 RNU6-857P-201ENST00000515893 110 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 RNU7-53P-201ENST00000516705 60 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 AL162274.2-201ENST00000614406 332 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.59□□□□□ -1.99
HIF3AQ9Y2N7 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.59□□□□□ -2
HIF3AQ9Y2N7 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.58□□□□□ -2
HIF3AQ9Y2N7 RNA5SP374-201ENST00000362939 125 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 RNU6-1031P-201ENST00000384773 107 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 MIR518A2-201ENST00000384966 87 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 U8.15-201ENST00000390947 134 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 RNU6-279P-201ENST00000391297 101 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 SNORD88.1-201ENST00000408684 91 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 HMGN1P33-201ENST00000432945 451 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 RPS29P29-201ENST00000456396 171 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 MIR8057-201ENST00000620957 69 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 MIR6717-201ENST00000622747 73 ntBASIC2.58□□□□□ -2
HIF3AQ9Y2N7 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
HIF3AQ9Y2N7 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.58□□□□□ -2
HIF3AQ9Y2N7 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HIF3AQ9Y2N7 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.57□□□□□ -2
HIF3AQ9Y2N7 VTRNA1-1-201ENST00000363120 99 ntBASIC2.57□□□□□ -2
HIF3AQ9Y2N7 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.57□□□□□ -2
HIF3AQ9Y2N7 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.57□□□□□ -2
HIF3AQ9Y2N7 RNU7-171P-201ENST00000459581 62 ntBASIC2.57□□□□□ -2
HIF3AQ9Y2N7 RNU6-86P-201ENST00000606534 107 ntBASIC2.57□□□□□ -2
HIF3AQ9Y2N7 AC103810.7-201ENST00000607821 91 ntBASIC2.57□□□□□ -2
HIF3AQ9Y2N7 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 187.5 ms