Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.666-201ENST00000516187 112 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 AC007751.1-201ENST00000529260 376 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 AC006441.5-201ENST00000612680 209 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 PVT1_3.1-201ENST00000620853 95 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 ICE2P2-201ENST00000483823 2787 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.29-201ENST00000362570 113 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.66-201ENST00000362862 102 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 RNU6-103P-201ENST00000363686 107 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.182-201ENST00000363880 111 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 RNA5SP259-201ENST00000365541 109 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 RNY3P5-201ENST00000384127 102 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 RNU6-939P-201ENST00000384634 107 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 MIR516B2-201ENST00000385190 85 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 MIR653-201ENST00000385279 96 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.793-201ENST00000411222 111 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 AC074198.2-201ENST00000508153 258 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 RNU6-861P-201ENST00000516745 106 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.700-201ENST00000516806 100 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 AC090821.2-201ENST00000523552 176 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 AL365434.2-201ENST00000607979 234 ntBASIC1.23□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.75-201ENST00000362927 97 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 RNU6-199P-201ENST00000362954 107 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 SNORD14E-201ENST00000364009 85 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.336-201ENST00000365307 109 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 SNORD26-201ENST00000384147 75 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 RNU4-70P-201ENST00000384579 139 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 SNORD41-201ENST00000386967 70 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 PCNPP3-201ENST00000393579 471 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 RNU4-43P-201ENST00000410628 137 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 RNU5E-9P-201ENST00000411164 104 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 AL138752.1-201ENST00000452964 351 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 AP002392.1-201ENST00000537692 208 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 AC097639.2-201ENST00000603159 172 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 MIR8063-201ENST00000621930 81 ntBASIC1.22□□□□□ -2.21
UPF3AQ9H1J1 MIR373-201ENST00000362273 69 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.23-201ENST00000362496 106 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.634-201ENST00000364811 113 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 RNU6-275P-201ENST00000364910 107 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 RNU6-442P-201ENST00000383968 104 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 SNORD61-201ENST00000384252 73 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 MIR15B-201ENST00000385045 98 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 RNU2-55P-201ENST00000411146 174 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 AC027119.1-201ENST00000440877 241 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 RPS23P4-201ENST00000487908 423 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 RNU7-25P-201ENST00000516544 62 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.714-201ENST00000517065 90 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 AC019176.1-201ENST00000518519 225 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 MRPS18CP4-201ENST00000535821 231 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 AC072026.1-201ENST00000605023 201 ntBASIC1.21□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.240-201ENST00000364469 95 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 SNORA25.8-201ENST00000364831 128 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.432-201ENST00000384087 111 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 MIR518F-201ENST00000384973 87 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 MT-TR-201ENST00000387439 65 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 RNU1-78P-201ENST00000391248 165 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 AL591704.2-201ENST00000421658 181 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 RPS27P16-201ENST00000425758 201 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 HMGN2P32-201ENST00000444648 269 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.797-201ENST00000515977 94 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 RNU4-57P-201ENST00000515980 135 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 RNU6-1299P-201ENST00000516316 100 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 FTX_2.1-201ENST00000618816 94 ntBASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
UPF3AQ9H1J1 SNORD114-26-201ENST00000363543 72 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 RNU6-728P-201ENST00000365375 104 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.547-201ENST00000384654 119 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 MIR1285-1-201ENST00000408593 84 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 AL121914.1-201ENST00000450188 156 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 AC023449.1-201ENST00000454464 154 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 RNA5SP153-201ENST00000516498 76 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 RNU6-197P-201ENST00000516680 100 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 RNU6-922P-201ENST00000516753 99 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 AC019288.1-201ENST00000557918 224 ntBASIC1.19□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.150-201ENST00000363562 102 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 RNU6-978P-201ENST00000364371 103 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 SNORA2.2-201ENST00000365473 135 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 SNORA1-201ENST00000384107 130 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 MIR452-201ENST00000385020 85 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 MIR548O-201ENST00000408583 114 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 RNU6-938P-201ENST00000411285 103 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 SEPT7P4-201ENST00000437076 306 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 snoU13.25-201ENST00000458945 104 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 RNU6-830P-201ENST00000516353 107 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 RNU6-1270P-201ENST00000517128 108 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 RNU6-165P-201ENST00000517170 99 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 AC090049.2-201ENST00000550377 109 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 MIR4662B-201ENST00000579498 81 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 MIR376A2-201ENST00000636782 80 ntBASIC1.18□□□□□ -2.22
UPF3AQ9H1J1 RNU6-888P-201ENST00000363010 101 ntBASIC1.17□□□□□ -2.22
UPF3AQ9H1J1 SNORD24-201ENST00000383884 75 ntBASIC1.17□□□□□ -2.22
UPF3AQ9H1J1 RNU6-643P-201ENST00000384018 107 ntBASIC1.17□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.494-201ENST00000384432 111 ntBASIC1.17□□□□□ -2.22
UPF3AQ9H1J1 SNORD28B-201ENST00000390993 75 ntBASIC1.17□□□□□ -2.22
UPF3AQ9H1J1 AC079140.2-201ENST00000506193 142 ntBASIC1.17□□□□□ -2.22
UPF3AQ9H1J1 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms