Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MIR4251-201ENST00000635819 61 ntBASIC1.75□□□□□ -2.13
CLRN3Q8NCR9 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 MIR570-201ENST00000384917 97 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 RNA5SP184-201ENST00000411071 108 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 RPL31P63-201ENST00000422565 375 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 RNU7-73P-201ENST00000458743 63 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 RNU2-11P-201ENST00000459191 187 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 snoU13.16-201ENST00000459350 104 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 RNU6-947P-201ENST00000516264 106 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 RNU6-113P-201ENST00000516653 101 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 RNU6-958P-201ENST00000516995 106 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 GTF3AP2-201ENST00000557014 266 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 AC011603.4-201ENST00000611325 277 ntBASIC1.74□□□□□ -2.13
CLRN3Q8NCR9 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 MIR342-201ENST00000362212 99 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 NDUFB4P4-201ENST00000404822 243 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 RNU7-41P-201ENST00000515917 61 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 Y_RNA.686-201ENST00000516548 134 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 RNU2-60P-201ENST00000517290 128 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 MIR4285-201ENST00000581001 85 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 AL096861.1-201ENST00000610899 123 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 AC006386.2-201ENST00000624491 75 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 AC012005.1-201ENST00000624575 75 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 AL596211.1-201ENST00000569873 2277 ntBASIC1.73□□□□□ -2.13
CLRN3Q8NCR9 AC016717.2-201ENST00000609089 5141 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 SNORA20-201ENST00000384662 132 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 MIR196B-201ENST00000384852 84 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 RNA5SP261-201ENST00000410536 106 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 SNORD109B-201ENST00000458961 67 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 SNORD109A-201ENST00000459128 67 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 AC026436.1-201ENST00000510537 270 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 RNA5SP281-201ENST00000516504 135 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 MIR1291-201ENST00000627649 87 ntBASIC1.72□□□□□ -2.13
CLRN3Q8NCR9 SNORA5B-201ENST00000363786 132 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 SNORA80A-201ENST00000363922 136 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 MIR539-201ENST00000365690 78 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 RNU6-257P-201ENST00000410238 98 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 RNA5SP272-201ENST00000516095 111 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 RN7SKP88-201ENST00000516847 250 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 EIF4BP1-201ENST00000554881 351 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 DNAJC19P9-201ENST00000555084 351 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 7SK.8-201ENST00000612110 250 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 7SK.11-201ENST00000615477 250 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 7SK.13-201ENST00000622040 250 ntBASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
CLRN3Q8NCR9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CLRN3Q8NCR9 RNY1P6-201ENST00000384193 109 ntBASIC1.7□□□□□ -2.14
CLRN3Q8NCR9 MIR27B-201ENST00000385129 97 ntBASIC1.7□□□□□ -2.14
CLRN3Q8NCR9 MTND4LP9-201ENST00000427694 174 ntBASIC1.7□□□□□ -2.14
CLRN3Q8NCR9 AL133373.1-201ENST00000497098 94 ntBASIC1.7□□□□□ -2.14
CLRN3Q8NCR9 RNA5SP24-201ENST00000516478 95 ntBASIC1.7□□□□□ -2.14
CLRN3Q8NCR9 AC079600.2-201ENST00000550076 130 ntBASIC1.7□□□□□ -2.14
CLRN3Q8NCR9 MIR3192-201ENST00000584920 77 ntBASIC1.7□□□□□ -2.14
CLRN3Q8NCR9 AL022345.2-201ENST00000606307 135 ntBASIC1.7□□□□□ -2.14
CLRN3Q8NCR9 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.69□□□□□ -2.14
CLRN3Q8NCR9 Y_RNA.586-201ENST00000391146 98 ntBASIC1.69□□□□□ -2.14
CLRN3Q8NCR9 RNU4-61P-201ENST00000411243 107 ntBASIC1.69□□□□□ -2.14
CLRN3Q8NCR9 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.69□□□□□ -2.14
CLRN3Q8NCR9 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.68□□□□□ -2.14
CLRN3Q8NCR9 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.68□□□□□ -2.14
CLRN3Q8NCR9 RNU6-165P-201ENST00000517170 99 ntBASIC1.68□□□□□ -2.14
CLRN3Q8NCR9 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.68□□□□□ -2.14
CLRN3Q8NCR9 MIR3152-201ENST00000579801 74 ntBASIC1.68□□□□□ -2.14
CLRN3Q8NCR9 AC009831.4-201ENST00000620744 325 ntBASIC1.68□□□□□ -2.14
CLRN3Q8NCR9 AC092881.1-201ENST00000638218 2733 ntBASIC1.68□□□□□ -2.14
CLRN3Q8NCR9 AC062016.1-201ENST00000355719 319 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 RNU6-309P-201ENST00000364573 106 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 RNU6-690P-201ENST00000365242 106 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 MIR634-201ENST00000385208 97 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 RNA5SP425-201ENST00000410336 112 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 RNU5E-3P-201ENST00000515913 68 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 RNU6-789P-201ENST00000517105 102 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 IGKV3-31-201ENST00000523109 329 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 MIR4319-201ENST00000577285 85 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 MIR3121-201ENST00000579680 77 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 AL020996.3-201ENST00000606617 222 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.67□□□□□ -2.14
CLRN3Q8NCR9 RNU6-647P-201ENST00000364243 107 ntBASIC1.66□□□□□ -2.14
CLRN3Q8NCR9 SNORA48.3-201ENST00000391081 134 ntBASIC1.66□□□□□ -2.14
CLRN3Q8NCR9 AC009474.2-201ENST00000451383 136 ntBASIC1.66□□□□□ -2.14
CLRN3Q8NCR9 RNU6-893P-201ENST00000458841 100 ntBASIC1.66□□□□□ -2.14
CLRN3Q8NCR9 MIR5007-201ENST00000583098 95 ntBASIC1.66□□□□□ -2.14
CLRN3Q8NCR9 SCARNA15.3-201ENST00000626315 122 ntBASIC1.66□□□□□ -2.14
CLRN3Q8NCR9 RNU6-349P-201ENST00000362402 107 ntBASIC1.65□□□□□ -2.15
CLRN3Q8NCR9 SNORA1.1-201ENST00000364671 133 ntBASIC1.65□□□□□ -2.15
CLRN3Q8NCR9 RNU6-1319P-201ENST00000390855 104 ntBASIC1.65□□□□□ -2.15
CLRN3Q8NCR9 RNU6-913P-201ENST00000390913 95 ntBASIC1.65□□□□□ -2.15
CLRN3Q8NCR9 RNU6-747P-201ENST00000390928 104 ntBASIC1.65□□□□□ -2.15
CLRN3Q8NCR9 RNU6-241P-201ENST00000391148 104 ntBASIC1.65□□□□□ -2.15
CLRN3Q8NCR9 RNU2-52P-201ENST00000410680 190 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms