Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 AC063976.4-201ENST00000421971 163 ntBASIC1.73□□□□□ -2.13
TTC3P53804 AF228730.3-201ENST00000436691 102 ntBASIC1.73□□□□□ -2.13
TTC3P53804 snoU13.18-201ENST00000459483 104 ntBASIC1.73□□□□□ -2.13
TTC3P53804 RNU7-25P-201ENST00000516544 62 ntBASIC1.73□□□□□ -2.13
TTC3P53804 Y_RNA.709-201ENST00000516952 92 ntBASIC1.73□□□□□ -2.13
TTC3P53804 MTND5P34-201ENST00000568888 325 ntBASIC1.73□□□□□ -2.13
TTC3P53804 MIR126-201ENST00000362291 85 ntBASIC1.73□□□□□ -2.13
TTC3P53804 RNU6-23P-201ENST00000363283 107 ntBASIC1.73□□□□□ -2.13
TTC3P53804 RNY1P11-201ENST00000363759 113 ntBASIC1.73□□□□□ -2.13
TTC3P53804 Y_RNA.203-201ENST00000364106 102 ntBASIC1.73□□□□□ -2.13
TTC3P53804 SNORA63D-201ENST00000364359 132 ntBASIC1.73□□□□□ -2.13
TTC3P53804 PDCD5P2-201ENST00000507570 312 ntBASIC1.73□□□□□ -2.13
TTC3P53804 RNA5SP137-201ENST00000516833 135 ntBASIC1.73□□□□□ -2.13
TTC3P53804 AC087685.1-201ENST00000587507 141 ntBASIC1.73□□□□□ -2.13
TTC3P53804 AL137067.1-201ENST00000615933 120 ntBASIC1.73□□□□□ -2.13
TTC3P53804 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
TTC3P53804 SNORA7.1-201ENST00000363750 139 ntBASIC1.72□□□□□ -2.13
TTC3P53804 RNU6-60P-201ENST00000364792 103 ntBASIC1.72□□□□□ -2.13
TTC3P53804 RNU6-1189P-201ENST00000383958 107 ntBASIC1.72□□□□□ -2.13
TTC3P53804 RNU6-360P-201ENST00000390944 104 ntBASIC1.72□□□□□ -2.13
TTC3P53804 AC004965.1-201ENST00000413033 213 ntBASIC1.72□□□□□ -2.13
TTC3P53804 snoU13.27-201ENST00000459278 104 ntBASIC1.72□□□□□ -2.13
TTC3P53804 AC114811.1-201ENST00000507207 168 ntBASIC1.72□□□□□ -2.13
TTC3P53804 RNU6-1061P-201ENST00000516530 99 ntBASIC1.72□□□□□ -2.13
TTC3P53804 RNU7-28P-201ENST00000516759 62 ntBASIC1.72□□□□□ -2.13
TTC3P53804 AC021443.1-201ENST00000604478 211 ntBASIC1.72□□□□□ -2.13
TTC3P53804 AC022202.1-201ENST00000613515 211 ntBASIC1.72□□□□□ -2.13
TTC3P53804 RNU6-834P-201ENST00000362367 110 ntBASIC1.71□□□□□ -2.14
TTC3P53804 RNU6-215P-201ENST00000365169 102 ntBASIC1.71□□□□□ -2.14
TTC3P53804 Y_RNA.336-201ENST00000365307 109 ntBASIC1.71□□□□□ -2.14
TTC3P53804 Y_RNA.370-201ENST00000365589 108 ntBASIC1.71□□□□□ -2.14
TTC3P53804 RNU2-40P-201ENST00000410833 196 ntBASIC1.71□□□□□ -2.14
TTC3P53804 RNA5SP450-201ENST00000411206 102 ntBASIC1.71□□□□□ -2.14
TTC3P53804 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.71□□□□□ -2.14
TTC3P53804 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
TTC3P53804 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
TTC3P53804 Y_RNA.37-201ENST00000362606 108 ntBASIC1.71□□□□□ -2.14
TTC3P53804 Y_RNA.351-201ENST00000365436 96 ntBASIC1.71□□□□□ -2.14
TTC3P53804 RNU6-424P-201ENST00000384367 105 ntBASIC1.71□□□□□ -2.14
TTC3P53804 RN7SKP200-201ENST00000410564 320 ntBASIC1.71□□□□□ -2.14
TTC3P53804 RNA5SP233-201ENST00000459153 113 ntBASIC1.71□□□□□ -2.14
TTC3P53804 MIR5194-201ENST00000582634 120 ntBASIC1.71□□□□□ -2.14
TTC3P53804 AL512598.1-201ENST00000610158 273 ntBASIC1.71□□□□□ -2.14
TTC3P53804 RNU1-42P-201ENST00000364033 160 ntBASIC1.7□□□□□ -2.14
TTC3P53804 RNU6-1292P-201ENST00000383856 107 ntBASIC1.7□□□□□ -2.14
TTC3P53804 RNU6-950P-201ENST00000384651 107 ntBASIC1.7□□□□□ -2.14
TTC3P53804 MIR570-201ENST00000384917 97 ntBASIC1.7□□□□□ -2.14
TTC3P53804 HMGN2P19-201ENST00000425149 265 ntBASIC1.7□□□□□ -2.14
TTC3P53804 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.7□□□□□ -2.14
TTC3P53804 Y_RNA.690-201ENST00000516603 95 ntBASIC1.7□□□□□ -2.14
TTC3P53804 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.7□□□□□ -2.14
TTC3P53804 MIR4287-201ENST00000579398 78 ntBASIC1.7□□□□□ -2.14
TTC3P53804 BX248123.2-201ENST00000606318 124 ntBASIC1.7□□□□□ -2.14
TTC3P53804 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.7□□□□□ -2.14
TTC3P53804 AC245060.5-201ENST00000610778 3293 ntBASIC1.7□□□□□ -2.14
TTC3P53804 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
TTC3P53804 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
TTC3P53804 RNU6-888P-201ENST00000363010 101 ntBASIC1.69□□□□□ -2.14
TTC3P53804 Y_RNA.366-201ENST00000365540 102 ntBASIC1.69□□□□□ -2.14
TTC3P53804 RNU1-52P-201ENST00000384190 164 ntBASIC1.69□□□□□ -2.14
TTC3P53804 SNORD33.1-201ENST00000516213 88 ntBASIC1.69□□□□□ -2.14
TTC3P53804 RNU6-589P-201ENST00000516485 107 ntBASIC1.69□□□□□ -2.14
TTC3P53804 MIR514B-201ENST00000516774 80 ntBASIC1.69□□□□□ -2.14
TTC3P53804 MIR4421-201ENST00000578133 69 ntBASIC1.69□□□□□ -2.14
TTC3P53804 MIR3935-201ENST00000583472 104 ntBASIC1.69□□□□□ -2.14
TTC3P53804 AL022345.2-201ENST00000606307 135 ntBASIC1.69□□□□□ -2.14
TTC3P53804 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.69□□□□□ -2.14
TTC3P53804 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
TTC3P53804 AL442644.1-201ENST00000454390 3105 ntBASIC1.69□□□□□ -2.14
TTC3P53804 Y_RNA.114-201ENST00000363265 113 ntBASIC1.69□□□□□ -2.14
TTC3P53804 RNU6-268P-201ENST00000364174 107 ntBASIC1.69□□□□□ -2.14
TTC3P53804 RNU6-153P-201ENST00000364422 104 ntBASIC1.69□□□□□ -2.14
TTC3P53804 MIR517C-201ENST00000385103 95 ntBASIC1.69□□□□□ -2.14
TTC3P53804 Y_RNA.621-201ENST00000411065 96 ntBASIC1.69□□□□□ -2.14
TTC3P53804 RNU2-11P-201ENST00000459191 187 ntBASIC1.69□□□□□ -2.14
TTC3P53804 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.69□□□□□ -2.14
TTC3P53804 SNORA28-201ENST00000606769 126 ntBASIC1.69□□□□□ -2.14
TTC3P53804 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.69□□□□□ -2.14
TTC3P53804 Y_RNA.261-201ENST00000364631 102 ntBASIC1.68□□□□□ -2.14
TTC3P53804 SNORD58C-201ENST00000365223 64 ntBASIC1.68□□□□□ -2.14
TTC3P53804 RNU6-476P-201ENST00000384726 107 ntBASIC1.68□□□□□ -2.14
TTC3P53804 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
TTC3P53804 MIR1276-201ENST00000408707 83 ntBASIC1.68□□□□□ -2.14
TTC3P53804 SCARNA15-202ENST00000516881 127 ntBASIC1.68□□□□□ -2.14
TTC3P53804 RNU2-19P-201ENST00000517288 84 ntBASIC1.68□□□□□ -2.14
TTC3P53804 AC025166.1-201ENST00000612411 163 ntBASIC1.68□□□□□ -2.14
TTC3P53804 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.68□□□□□ -2.14
TTC3P53804 Y_RNA.35-201ENST00000362601 101 ntBASIC1.67□□□□□ -2.14
TTC3P53804 RNU6-53P-201ENST00000365367 106 ntBASIC1.67□□□□□ -2.14
TTC3P53804 RNU6-163P-201ENST00000384396 106 ntBASIC1.67□□□□□ -2.14
TTC3P53804 MIRLET7F2-201ENST00000385277 83 ntBASIC1.67□□□□□ -2.14
TTC3P53804 HMGN2P39-201ENST00000398005 273 ntBASIC1.67□□□□□ -2.14
TTC3P53804 SNORD45.4-201ENST00000516629 73 ntBASIC1.67□□□□□ -2.14
TTC3P53804 Y_RNA.712-201ENST00000517011 92 ntBASIC1.67□□□□□ -2.14
TTC3P53804 AC024614.2-201ENST00000577584 372 ntBASIC1.67□□□□□ -2.14
TTC3P53804 MIR5197-201ENST00000583721 112 ntBASIC1.67□□□□□ -2.14
TTC3P53804 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.67□□□□□ -2.14
TTC3P53804 MIR518E-201ENST00000385252 88 ntBASIC1.67□□□□□ -2.14
TTC3P53804 U8.16-201ENST00000391279 133 ntBASIC1.67□□□□□ -2.14
TTC3P53804 CALM2P4-201ENST00000430810 426 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms