Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 Y_RNA.651-201ENST00000459380 103 ntBASIC2.28□□□□□ -2.04
MRE11P49959 RNU5E-3P-201ENST00000515913 68 ntBASIC2.28□□□□□ -2.04
MRE11P49959 RNA5SP236-201ENST00000516169 116 ntBASIC2.28□□□□□ -2.04
MRE11P49959 RNU7-28P-201ENST00000516759 62 ntBASIC2.28□□□□□ -2.04
MRE11P49959 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.28□□□□□ -2.04
MRE11P49959 MIR3122-201ENST00000577243 73 ntBASIC2.28□□□□□ -2.04
MRE11P49959 AL022345.2-201ENST00000606307 135 ntBASIC2.28□□□□□ -2.04
MRE11P49959 AL627230.6-201ENST00000611129 280 ntBASIC2.28□□□□□ -2.04
MRE11P49959 AC006441.5-201ENST00000612680 209 ntBASIC2.28□□□□□ -2.04
MRE11P49959 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.28□□□□□ -2.04
MRE11P49959 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.28□□□□□ -2.04
MRE11P49959 MIR8054-201ENST00000620877 86 ntBASIC2.28□□□□□ -2.04
MRE11P49959 MTND5P32-201ENST00000560711 1802 ntBASIC2.28□□□□□ -2.04
MRE11P49959 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
MRE11P49959 RNU6-1084P-201ENST00000362498 107 ntBASIC2.27□□□□□ -2.05
MRE11P49959 RNU6-647P-201ENST00000364243 107 ntBASIC2.27□□□□□ -2.05
MRE11P49959 snoU2-30.1-201ENST00000365012 70 ntBASIC2.27□□□□□ -2.05
MRE11P49959 RNU6-44P-201ENST00000384045 107 ntBASIC2.27□□□□□ -2.05
MRE11P49959 MIR1283-2-201ENST00000408621 87 ntBASIC2.27□□□□□ -2.05
MRE11P49959 RNU4-62P-201ENST00000410125 130 ntBASIC2.27□□□□□ -2.05
MRE11P49959 RNU6-1064P-201ENST00000410626 104 ntBASIC2.27□□□□□ -2.05
MRE11P49959 Y_RNA.617-201ENST00000410920 90 ntBASIC2.27□□□□□ -2.05
MRE11P49959 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.27□□□□□ -2.05
MRE11P49959 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.27□□□□□ -2.05
MRE11P49959 SNRPGP14-201ENST00000435400 219 ntBASIC2.27□□□□□ -2.05
MRE11P49959 MTATP6P21-201ENST00000440681 189 ntBASIC2.27□□□□□ -2.05
MRE11P49959 SNORD45.4-201ENST00000516629 73 ntBASIC2.27□□□□□ -2.05
MRE11P49959 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.27□□□□□ -2.05
MRE11P49959 MIR5094-201ENST00000578766 85 ntBASIC2.27□□□□□ -2.05
MRE11P49959 RNU6-268P-201ENST00000364174 107 ntBASIC2.26□□□□□ -2.05
MRE11P49959 RNU6-476P-201ENST00000384726 107 ntBASIC2.26□□□□□ -2.05
MRE11P49959 RNU6-440P-201ENST00000390882 105 ntBASIC2.26□□□□□ -2.05
MRE11P49959 RNU11-3P-201ENST00000391111 133 ntBASIC2.26□□□□□ -2.05
MRE11P49959 MIR548O-201ENST00000408583 114 ntBASIC2.26□□□□□ -2.05
MRE11P49959 Y_RNA.630-201ENST00000411370 108 ntBASIC2.26□□□□□ -2.05
MRE11P49959 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.26□□□□□ -2.05
MRE11P49959 RNU6-1061P-201ENST00000516530 99 ntBASIC2.26□□□□□ -2.05
MRE11P49959 RNU6-1149P-201ENST00000516810 97 ntBASIC2.26□□□□□ -2.05
MRE11P49959 AC133485.4-201ENST00000561835 220 ntBASIC2.26□□□□□ -2.05
MRE11P49959 AC138907.4-201ENST00000570107 226 ntBASIC2.26□□□□□ -2.05
MRE11P49959 MIR376A2-201ENST00000636782 80 ntBASIC2.26□□□□□ -2.05
MRE11P49959 U6.95-201ENST00000636931 70 ntBASIC2.26□□□□□ -2.05
MRE11P49959 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
MRE11P49959 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
MRE11P49959 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
MRE11P49959 SNORD58C-201ENST00000365223 64 ntBASIC2.25□□□□□ -2.05
MRE11P49959 RNU6-1144P-201ENST00000384247 104 ntBASIC2.25□□□□□ -2.05
MRE11P49959 RNU6-429P-201ENST00000384582 108 ntBASIC2.25□□□□□ -2.05
MRE11P49959 STAG3L5P-204ENST00000443759 179 ntBASIC2.25□□□□□ -2.05
MRE11P49959 SNORA31.10-201ENST00000516482 106 ntBASIC2.25□□□□□ -2.05
MRE11P49959 RNU7-25P-201ENST00000516544 62 ntBASIC2.25□□□□□ -2.05
MRE11P49959 SCARNA15-202ENST00000516881 127 ntBASIC2.25□□□□□ -2.05
MRE11P49959 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
MRE11P49959 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
MRE11P49959 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
MRE11P49959 Y_RNA.205-201ENST00000364128 113 ntBASIC2.24□□□□□ -2.05
MRE11P49959 SNORA16B-201ENST00000364674 135 ntBASIC2.24□□□□□ -2.05
MRE11P49959 Y_RNA.336-201ENST00000365307 109 ntBASIC2.24□□□□□ -2.05
MRE11P49959 MIR518A2-201ENST00000384966 87 ntBASIC2.24□□□□□ -2.05
MRE11P49959 AC019129.1-201ENST00000403786 261 ntBASIC2.24□□□□□ -2.05
MRE11P49959 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.24□□□□□ -2.05
MRE11P49959 MIR5197-201ENST00000583721 112 ntBASIC2.24□□□□□ -2.05
MRE11P49959 AL096840.1-201ENST00000603287 93 ntBASIC2.24□□□□□ -2.05
MRE11P49959 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.24□□□□□ -2.05
MRE11P49959 Y_RNA.547-201ENST00000384654 119 ntBASIC2.23□□□□□ -2.05
MRE11P49959 RNA5SP465-201ENST00000391195 109 ntBASIC2.23□□□□□ -2.05
MRE11P49959 SNORA40.18-201ENST00000391200 128 ntBASIC2.23□□□□□ -2.05
MRE11P49959 AC069257.2-201ENST00000441819 155 ntBASIC2.23□□□□□ -2.05
MRE11P49959 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.23□□□□□ -2.05
MRE11P49959 SNORD33.1-201ENST00000516213 88 ntBASIC2.23□□□□□ -2.05
MRE11P49959 RNU6-781P-201ENST00000516377 101 ntBASIC2.23□□□□□ -2.05
MRE11P49959 MIR5089-201ENST00000580047 84 ntBASIC2.23□□□□□ -2.05
MRE11P49959 AC108081.1-201ENST00000604358 221 ntBASIC2.23□□□□□ -2.05
MRE11P49959 MIR6129-201ENST00000616087 109 ntBASIC2.23□□□□□ -2.05
MRE11P49959 AC134878.1-201ENST00000619901 243 ntBASIC2.23□□□□□ -2.05
MRE11P49959 MIRLET7C-201ENST00000362160 84 ntBASIC2.22□□□□□ -2.05
MRE11P49959 SNORA63D-201ENST00000364359 132 ntBASIC2.22□□□□□ -2.05
MRE11P49959 RNA5SP190-201ENST00000365222 118 ntBASIC2.22□□□□□ -2.05
MRE11P49959 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
MRE11P49959 HSPE1P9-201ENST00000440046 311 ntBASIC2.22□□□□□ -2.05
MRE11P49959 HMGN2P32-201ENST00000444648 269 ntBASIC2.22□□□□□ -2.05
MRE11P49959 SNORD13-201ENST00000459299 104 ntBASIC2.22□□□□□ -2.05
MRE11P49959 AC114811.1-201ENST00000507207 168 ntBASIC2.22□□□□□ -2.05
MRE11P49959 RN7SKP19-201ENST00000516016 252 ntBASIC2.22□□□□□ -2.05
MRE11P49959 RNVU1-2-201ENST00000516326 135 ntBASIC2.22□□□□□ -2.05
MRE11P49959 RNU6-1116P-201ENST00000517269 99 ntBASIC2.22□□□□□ -2.05
MRE11P49959 MTND5P34-201ENST00000568888 325 ntBASIC2.22□□□□□ -2.05
MRE11P49959 AC024614.2-201ENST00000577584 372 ntBASIC2.22□□□□□ -2.05
MRE11P49959 SNORA28-201ENST00000606769 126 ntBASIC2.22□□□□□ -2.05
MRE11P49959 MIR6515-201ENST00000619843 57 ntBASIC2.22□□□□□ -2.05
MRE11P49959 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
MRE11P49959 SNORD115-28-201ENST00000363931 81 ntBASIC2.21□□□□□ -2.06
MRE11P49959 Y_RNA.410-201ENST00000383992 113 ntBASIC2.21□□□□□ -2.06
MRE11P49959 MIRLET7F2-201ENST00000385277 83 ntBASIC2.21□□□□□ -2.06
MRE11P49959 RPL23AP6-201ENST00000446637 472 ntBASIC2.21□□□□□ -2.06
MRE11P49959 Y_RNA.37-201ENST00000362606 108 ntBASIC2.2□□□□□ -2.06
MRE11P49959 RNU6-1189P-201ENST00000383958 107 ntBASIC2.2□□□□□ -2.06
MRE11P49959 RNU6-342P-201ENST00000384521 104 ntBASIC2.2□□□□□ -2.06
MRE11P49959 SNORA48.1-201ENST00000390879 135 ntBASIC2.2□□□□□ -2.06
MRE11P49959 RNY4P18-201ENST00000391107 89 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms