Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SCARNA15-202ENST00000516881 127 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 RNU6-341P-201ENST00000516973 96 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 AC121758.2-201ENST00000553271 193 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 AC134878.1-201ENST00000619901 243 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 Y_RNA.410-201ENST00000383992 113 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 MIR218-1-201ENST00000384999 110 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 MIR320A-201ENST00000385302 82 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 AC011406.1-201ENST00000512440 370 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 RNU6-970P-201ENST00000516312 107 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 RNU1-142P-201ENST00000516682 145 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 MIR5694-201ENST00000581190 76 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 AC022217.4-201ENST00000604389 163 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 RNU6-94P-201ENST00000607728 107 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.03□□□□□ -2.08
COL3A1P02461 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 RMST_2.1-201ENST00000617263 136 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
COL3A1P02461 MIR7515-201ENST00000637837 67 ntBASIC2.03□□□□□ -2.08
COL3A1P02461 MIR126-201ENST00000362291 85 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 snoU2-30.2-201ENST00000362805 70 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 Y_RNA.267-201ENST00000364679 109 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 RNU6-60P-201ENST00000364792 103 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 Y_RNA.544-201ENST00000384650 113 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 MIR95-201ENST00000385072 81 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 FTH1P12-201ENST00000432137 551 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 AL049830.1-201ENST00000468034 425 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 RNU6-1291P-201ENST00000516591 104 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 MIR3199-1-201ENST00000582434 88 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 MIR5194-201ENST00000582634 120 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.02□□□□□ -2.09
COL3A1P02461 Y_RNA.213-201ENST00000364178 111 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 Y_RNA.323-201ENST00000365157 109 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 MIR144-201ENST00000384886 86 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 MIR561-201ENST00000385216 97 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 MIR802-201ENST00000390235 94 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 RNU6-440P-201ENST00000390882 105 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 SNORA26.2-201ENST00000390922 122 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 RNA5SP467-201ENST00000391274 118 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 FO393413.1-201ENST00000402892 195 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 AC099677.2-201ENST00000436385 175 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 RNU7-94P-201ENST00000459576 63 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 RPL39P34-201ENST00000477141 156 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.01□□□□□ -2.09
COL3A1P02461 RNU7-70P-201ENST00000516941 66 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 AC012493.3-201ENST00000604494 112 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 MIR6079-201ENST00000635807 62 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
COL3A1P02461 RNU6-640P-201ENST00000363693 105 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 SNORA2.2-201ENST00000365473 135 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 MIR548A2-201ENST00000384956 97 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 AL117342.1-201ENST00000404861 406 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 RNU6-1328P-201ENST00000410938 106 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 RPS3AP1-201ENST00000413190 320 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 RNU6-240P-201ENST00000516098 97 ntBASIC2.01□□□□□ -2.09
COL3A1P02461 RNU6-1084P-201ENST00000362498 107 ntBASIC2□□□□□ -2.09
COL3A1P02461 RNA5SP363-201ENST00000365072 115 ntBASIC2□□□□□ -2.09
COL3A1P02461 RNU6-1189P-201ENST00000383958 107 ntBASIC2□□□□□ -2.09
COL3A1P02461 Y_RNA.558-201ENST00000384685 113 ntBASIC2□□□□□ -2.09
COL3A1P02461 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2□□□□□ -2.09
COL3A1P02461 EDDM3CP-201ENST00000415977 425 ntBASIC2□□□□□ -2.09
COL3A1P02461 SEM1P1-201ENST00000506694 209 ntBASIC2□□□□□ -2.09
COL3A1P02461 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2□□□□□ -2.09
COL3A1P02461 MIR5197-201ENST00000583721 112 ntBASIC2□□□□□ -2.09
COL3A1P02461 MIR2052-201ENST00000636055 55 ntBASIC2□□□□□ -2.09
COL3A1P02461 RNU6-690P-201ENST00000365242 106 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 RNU6-442P-201ENST00000383968 104 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 MIR522-201ENST00000385071 87 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 RNA5SP323-201ENST00000391094 133 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 RNU2-63P-201ENST00000410792 194 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 AC004965.1-201ENST00000413033 213 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.99□□□□□ -2.09
COL3A1P02461 SNORA48.11-201ENST00000517015 89 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.99□□□□□ -2.09
COL3A1P02461 AP002004.2-201ENST00000531656 154 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 MIR4778-201ENST00000577635 80 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 MIR5009-201ENST00000578736 100 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 AL355297.2-201ENST00000604792 129 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 AC006441.5-201ENST00000612680 209 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 MIR338-201ENST00000636369 67 ntBASIC1.99□□□□□ -2.09
COL3A1P02461 RNU6-414P-201ENST00000363705 104 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 RNU1-42P-201ENST00000364033 160 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 RNU6-1131P-201ENST00000364955 107 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 MIR518F-201ENST00000384973 87 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 MIR548O-201ENST00000408583 114 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 RNY4P29-201ENST00000410801 97 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 AL353689.1-201ENST00000438895 199 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 RNU6-1041P-201ENST00000516254 102 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 AC068339.1-201ENST00000526965 141 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 AL512598.1-201ENST00000610158 273 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.98□□□□□ -2.09
COL3A1P02461 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.98□□□□□ -2.09
COL3A1P02461 MIR340-201ENST00000362125 95 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 RNU1-23P-201ENST00000363361 144 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 SNORD115-28-201ENST00000363931 81 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 SNORA68.1-201ENST00000364537 132 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 Y_RNA.362-201ENST00000365518 110 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 SNORA51.10-201ENST00000384418 136 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 U8.17-201ENST00000391292 132 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 RNU2-48P-201ENST00000410694 191 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 RNU7-128P-201ENST00000517247 62 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms