Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORA31.1-201ENST00000515993 133 ntBASIC3.36□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 Y_RNA.659-201ENST00000515994 113 ntBASIC3.36□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SNORA31.5-201ENST00000516190 133 ntBASIC3.36□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SNORA80E-201ENST00000384744 137 ntBASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SNX2P2-201ENST00000424553 323 ntBASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AL031183.1-201ENST00000457667 207 ntBASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MIR1273D-201ENST00000577266 86 ntBASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MIR4668-201ENST00000582284 70 ntBASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AL513534.2-201ENST00000603836 250 ntBASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MIR342-201ENST00000362212 99 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SNORD116-10-201ENST00000363791 102 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNA5SP323-201ENST00000391094 133 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AL512326.2-201ENST00000426359 151 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RPL23AP63-201ENST00000498752 471 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU6-1018P-201ENST00000516577 106 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SNORD45.4-201ENST00000516629 73 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SCARNA11.3-201ENST00000517276 130 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AL353149.1-201ENST00000610667 244 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SNORA50A-202ENST00000629536 136 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 U6.108-201ENST00000637764 58 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AC091304.10-201ENST00000641554 121 ntBASIC3.34□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR340-201ENST00000362125 95 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR515-2-201ENST00000384883 83 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR515-1-201ENST00000384884 83 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU6-679P-201ENST00000391003 106 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 SNORA7.5-201ENST00000410672 110 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 TRMT112P2-201ENST00000512910 132 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR4439-201ENST00000583746 80 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AC096720.1-201ENST00000604441 183 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR338-201ENST00000636369 67 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AL355596.1-201ENST00000565399 3996 ntBASIC3.33□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 SNORD77B-201ENST00000391112 67 ntBASIC3.32□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU4-69P-201ENST00000410677 143 ntBASIC3.32□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.32□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR5739-201ENST00000619803 80 ntBASIC3.32□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AC021613.1-201ENST00000623880 111 ntBASIC3.32□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU6-1201P-201ENST00000384227 107 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 SNORA27-201ENST00000384323 126 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 SNORD38C-201ENST00000384381 69 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU6-1077P-201ENST00000410506 102 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 Y_RNA.611-201ENST00000410682 108 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU2-40P-201ENST00000410833 196 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNA5SP344-201ENST00000411081 104 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MICF-203ENST00000432679 129 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AL353813.1-201ENST00000440700 253 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU7-96P-201ENST00000459535 64 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU6-1041P-201ENST00000516254 102 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 SCARNA3-201ENST00000517097 143 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR7157-201ENST00000635801 60 ntBASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU6-42P-201ENST00000384165 107 ntBASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 SNORA8-201ENST00000384574 139 ntBASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 CYP2C59P-201ENST00000457790 269 ntBASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU6-998P-201ENST00000515894 101 ntBASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AC024995.1-201ENST00000523014 93 ntBASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AC006160.2-201ENST00000637708 154 ntBASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.3□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR21-201ENST00000362134 72 ntBASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU6-652P-201ENST00000365488 107 ntBASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 Y_RNA.467-201ENST00000384297 102 ntBASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNY1P4-201ENST00000384595 115 ntBASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNA5SP482-201ENST00000391269 118 ntBASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.29□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR378A-201ENST00000362177 66 ntBASIC3.28□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 Y_RNA.241-201ENST00000364470 117 ntBASIC3.28□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 Y_RNA.607-201ENST00000410597 98 ntBASIC3.28□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNU7-113P-201ENST00000459273 62 ntBASIC3.28□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 RNA5SP61-201ENST00000516453 100 ntBASIC3.28□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 MIR3199-1-201ENST00000582434 88 ntBASIC3.28□□□□□ -1.88
SENP3-EIF4A1A0A087X0R7 AC092435.3-201ENST00000565538 3654 ntBASIC3.28□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.27□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 194.5 ms