Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
NUP88Q99567 Y_RNA.29-201ENST00000362570 113 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 MIR1287-201ENST00000408492 90 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 AC027119.1-201ENST00000440877 241 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 SNRPGP13-201ENST00000442212 177 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 SNRPGP8-201ENST00000454064 226 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 AC005840.1-201ENST00000498412 377 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 RNU6-561P-201ENST00000516222 102 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 RNU6-947P-201ENST00000516264 106 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 AC022559.1-201ENST00000520905 205 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 AC108706.1-201ENST00000611053 297 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 AC006441.5-201ENST00000612680 209 ntBASIC1.8□□□□□ -2.12
NUP88Q99567 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
NUP88Q99567 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
NUP88Q99567 SNORA67.6-201ENST00000391093 99 ntBASIC1.79□□□□□ -2.12
NUP88Q99567 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.79□□□□□ -2.12
NUP88Q99567 RNU6-693P-201ENST00000516134 107 ntBASIC1.79□□□□□ -2.12
NUP88Q99567 RNU7-25P-201ENST00000516544 62 ntBASIC1.79□□□□□ -2.12
NUP88Q99567 RNU6-504P-201ENST00000516568 104 ntBASIC1.79□□□□□ -2.12
NUP88Q99567 RNU6-1270P-201ENST00000517128 108 ntBASIC1.79□□□□□ -2.12
NUP88Q99567 AL512598.1-201ENST00000610158 273 ntBASIC1.79□□□□□ -2.12
NUP88Q99567 AL121890.5-201ENST00000620848 304 ntBASIC1.79□□□□□ -2.12
NUP88Q99567 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
NUP88Q99567 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.78□□□□□ -2.12
NUP88Q99567 Y_RNA.91-201ENST00000363042 107 ntBASIC1.78□□□□□ -2.12
NUP88Q99567 Y_RNA.233-201ENST00000364407 101 ntBASIC1.78□□□□□ -2.12
NUP88Q99567 Y_RNA.634-201ENST00000364811 113 ntBASIC1.78□□□□□ -2.12
NUP88Q99567 MIR653-201ENST00000385279 96 ntBASIC1.78□□□□□ -2.12
NUP88Q99567 SNORA81.3-201ENST00000517283 198 ntBASIC1.78□□□□□ -2.12
NUP88Q99567 MIR7111-201ENST00000619751 72 ntBASIC1.78□□□□□ -2.12
NUP88Q99567 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.78□□□□□ -2.12
NUP88Q99567 Y_RNA.412-201ENST00000384001 104 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 RNU6-484P-201ENST00000384016 107 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 SNRPGP14-201ENST00000435400 219 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 AC245517.4-201ENST00000448601 281 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 RPL30P7-201ENST00000479312 323 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 RNA5SP153-201ENST00000516498 76 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 RNU6-197P-201ENST00000516680 100 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 AL357312.1-201ENST00000603879 298 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 AC072026.1-201ENST00000605023 201 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 GHRLOS.1-201ENST00000610995 70 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 U6.106-201ENST00000636360 105 ntBASIC1.77□□□□□ -2.13
NUP88Q99567 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.77□□□□□ -2.13
NUP88Q99567 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.76□□□□□ -2.13
NUP88Q99567 RNU6-275P-201ENST00000364910 107 ntBASIC1.76□□□□□ -2.13
NUP88Q99567 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.76□□□□□ -2.13
NUP88Q99567 RPL39P39-201ENST00000455840 151 ntBASIC1.76□□□□□ -2.13
NUP88Q99567 TRMT112P2-201ENST00000512910 132 ntBASIC1.76□□□□□ -2.13
NUP88Q99567 SNORD111.1-201ENST00000516421 86 ntBASIC1.76□□□□□ -2.13
NUP88Q99567 Y_RNA.700-201ENST00000516806 100 ntBASIC1.76□□□□□ -2.13
NUP88Q99567 AL359821.1-201ENST00000605519 182 ntBASIC1.76□□□□□ -2.13
NUP88Q99567 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.76□□□□□ -2.13
NUP88Q99567 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.76□□□□□ -2.13
NUP88Q99567 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
NUP88Q99567 MIR337-201ENST00000362281 93 ntBASIC1.75□□□□□ -2.13
NUP88Q99567 AC006461.1-201ENST00000412637 326 ntBASIC1.75□□□□□ -2.13
NUP88Q99567 RPS27P16-201ENST00000425758 201 ntBASIC1.75□□□□□ -2.13
NUP88Q99567 AL354695.1-201ENST00000427935 228 ntBASIC1.75□□□□□ -2.13
NUP88Q99567 SNORD123-201ENST00000459473 70 ntBASIC1.75□□□□□ -2.13
NUP88Q99567 RNU6-182P-201ENST00000516970 105 ntBASIC1.75□□□□□ -2.13
NUP88Q99567 RNU6-902P-201ENST00000517212 91 ntBASIC1.75□□□□□ -2.13
NUP88Q99567 AL161722.3-201ENST00000605789 2983 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 Y_RNA.435-201ENST00000384095 112 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 SNORD61-201ENST00000384252 73 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 Y_RNA.547-201ENST00000384654 119 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 MIR520C-201ENST00000385005 87 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 MIR517C-201ENST00000385103 95 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 SNORD41-201ENST00000386967 70 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 AC108059.2-201ENST00000434626 151 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.74□□□□□ -2.13
NUP88Q99567 RNU6-1219P-201ENST00000516143 112 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 RN7SKP88-201ENST00000516847 250 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 SNORA74.3-201ENST00000517108 154 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 RNU7-181P-201ENST00000517234 74 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 RNU6-794P-201ENST00000517261 64 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 AL512310.8-201ENST00000550183 120 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 7SK.8-201ENST00000612110 250 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 7SK.11-201ENST00000615477 250 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 MIR8070-201ENST00000616510 88 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 7SK.13-201ENST00000622040 250 ntBASIC1.74□□□□□ -2.13
NUP88Q99567 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
NUP88Q99567 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
NUP88Q99567 Y_RNA.75-201ENST00000362927 97 ntBASIC1.73□□□□□ -2.13
NUP88Q99567 SNORD24-201ENST00000383884 75 ntBASIC1.73□□□□□ -2.13
NUP88Q99567 RNU6-643P-201ENST00000384018 107 ntBASIC1.73□□□□□ -2.13
NUP88Q99567 U8.17-201ENST00000391292 132 ntBASIC1.73□□□□□ -2.13
NUP88Q99567 MIR1304-201ENST00000408243 91 ntBASIC1.73□□□□□ -2.13
NUP88Q99567 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.73□□□□□ -2.13
NUP88Q99567 MRPS18CP4-201ENST00000535821 231 ntBASIC1.73□□□□□ -2.13
NUP88Q99567 SNORD115-28-201ENST00000363931 81 ntBASIC1.72□□□□□ -2.13
NUP88Q99567 SNORA1.2-201ENST00000365189 134 ntBASIC1.72□□□□□ -2.13
NUP88Q99567 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
NUP88Q99567 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.72□□□□□ -2.13
NUP88Q99567 RNU6-861P-201ENST00000516745 106 ntBASIC1.72□□□□□ -2.13
NUP88Q99567 SNORA31.24-201ENST00000517232 57 ntBASIC1.72□□□□□ -2.13
NUP88Q99567 MIR3664-201ENST00000579074 99 ntBASIC1.72□□□□□ -2.13
NUP88Q99567 MIR3668-201ENST00000582138 75 ntBASIC1.72□□□□□ -2.13
NUP88Q99567 AC004792.1-201ENST00000614523 137 ntBASIC1.72□□□□□ -2.13
NUP88Q99567 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.71□□□□□ -2.14
NUP88Q99567 Y_RNA.357-201ENST00000365487 109 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms