Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC106754.2-201ENST00000623006 233 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 SNORD3E-202ENST00000627253 216 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 MTND5P32-201ENST00000560711 1802 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 SNORD24-201ENST00000383884 75 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 Y_RNA.420-201ENST00000384043 110 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 MIR194-1-201ENST00000384892 85 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 U8.13-201ENST00000390842 128 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 RPL30P13-201ENST00000418873 348 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 AL445646.1-201ENST00000431784 216 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 RNU6-126P-201ENST00000516685 103 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 MIR6845-201ENST00000613182 61 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 AC015726.2-201ENST00000620112 122 ntBASIC1.57□□□□□ -2.16
HOXD3P31249 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.57□□□□□ -2.16
HOXD3P31249 AC010332.2-201ENST00000613083 1904 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HOXD3P31249 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HOXD3P31249 U8.1-201ENST00000362843 134 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 RNU1-17P-201ENST00000363022 152 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 Y_RNA.164-201ENST00000363709 102 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 SNORD50.2-201ENST00000365465 70 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 MIR526A1-201ENST00000384897 85 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 MIR660-201ENST00000385235 97 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
HOXD3P31249 SNORA40.18-201ENST00000391200 128 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 RNA5SP489-201ENST00000410986 109 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 RNU6-938P-201ENST00000411285 103 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 AL445685.2-201ENST00000422551 342 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 MTND4LP9-201ENST00000427694 174 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 SNORA18.4-201ENST00000516440 124 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 RNU6-406P-201ENST00000516470 107 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 Y_RNA.686-201ENST00000516548 134 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 AC022254.1-201ENST00000567857 235 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 AL365205.2-201ENST00000594586 68 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 AL513423.1-201ENST00000621695 132 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 U2.22-201ENST00000636441 106 ntBASIC1.56□□□□□ -2.16
HOXD3P31249 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
HOXD3P31249 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.55□□□□□ -2.16
HOXD3P31249 MIR424-201ENST00000362227 98 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 Y_RNA.37-201ENST00000362606 108 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 Y_RNA.294-201ENST00000364916 102 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 Y_RNA.494-201ENST00000384432 111 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 SNORA19-201ENST00000384737 128 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 Y_RNA.586-201ENST00000391146 98 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 AC019129.1-201ENST00000403786 261 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 HMGN2P32-201ENST00000444648 269 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 SNORD36C-201ENST00000516733 66 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 RNU7-181P-201ENST00000517234 74 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 RNU2-60P-201ENST00000517290 128 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 MIR4713-201ENST00000582691 75 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 MIR5002-201ENST00000584713 97 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 AC002984.1-201ENST00000591692 448 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 AP001485.1-201ENST00000604799 199 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 AC091895.1-201ENST00000624494 256 ntBASIC1.55□□□□□ -2.16
HOXD3P31249 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
HOXD3P31249 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.54□□□□□ -2.16
HOXD3P31249 SNORD115-28-201ENST00000363931 81 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 Y_RNA.242-201ENST00000364473 110 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 SNORD38C-201ENST00000384381 69 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 Y_RNA.584-201ENST00000391090 114 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 SNORA26.9-201ENST00000391322 122 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 RNA5SP127-201ENST00000411051 133 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 AC004965.1-201ENST00000413033 213 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.54□□□□□ -2.16
HOXD3P31249 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.54□□□□□ -2.16
HOXD3P31249 AC025033.1-201ENST00000463883 194 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.54□□□□□ -2.16
HOXD3P31249 RNU4-57P-201ENST00000515980 135 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.54□□□□□ -2.16
HOXD3P31249 ZNF355P-201ENST00000427301 3216 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 Y_RNA.52-201ENST00000362760 96 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 RNU6-915P-201ENST00000364943 103 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 MIR624-201ENST00000385217 97 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 AL606753.1-201ENST00000427435 87 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.53□□□□□ -2.16
HOXD3P31249 TMSB4XP3-201ENST00000445144 114 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 AL021397.1-201ENST00000451806 248 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 RNU1-40P-201ENST00000516816 164 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 RNU1-97P-201ENST00000516872 164 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 RNU6-789P-201ENST00000517105 102 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.53□□□□□ -2.16
HOXD3P31249 AC131055.1-201ENST00000584626 316 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 SNRPGP19-201ENST00000603826 189 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 AC134878.1-201ENST00000619901 243 ntBASIC1.53□□□□□ -2.16
HOXD3P31249 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
HOXD3P31249 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.53□□□□□ -2.17
HOXD3P31249 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.52□□□□□ -2.17
HOXD3P31249 RNU6-414P-201ENST00000363705 104 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 RNU6-309P-201ENST00000364573 106 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 AL161935.2-201ENST00000414627 60 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 JTBP1-201ENST00000441314 247 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 RNU6-917P-201ENST00000516294 104 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 RNU6-971P-201ENST00000516920 106 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 SNORA77B-201ENST00000578179 125 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 MIR4448-201ENST00000584360 86 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 FAM106DP-201ENST00000586416 501 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 AP000942.3-201ENST00000603702 160 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 AC132825.6-201ENST00000638861 357 ntBASIC1.52□□□□□ -2.17
HOXD3P31249 RNA5SP160-201ENST00000364866 120 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 RNA5SP37-201ENST00000365420 130 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms