Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
LDB3O75112 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.66□□□□□ -2.14
LDB3O75112 MIR8081-201ENST00000611533 95 ntBASIC1.66□□□□□ -2.14
LDB3O75112 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.66□□□□□ -2.14
LDB3O75112 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.66□□□□□ -2.14
LDB3O75112 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
LDB3O75112 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.14
LDB3O75112 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
LDB3O75112 AL391516.1-201ENST00000554380 2449 ntBASIC1.65□□□□□ -2.15
LDB3O75112 Y_RNA.52-201ENST00000362760 96 ntBASIC1.65□□□□□ -2.15
LDB3O75112 SNORD68-201ENST00000363214 84 ntBASIC1.65□□□□□ -2.15
LDB3O75112 SNORA25.7-201ENST00000364375 127 ntBASIC1.65□□□□□ -2.15
LDB3O75112 Y_RNA.280-201ENST00000364765 112 ntBASIC1.65□□□□□ -2.15
LDB3O75112 SNORA4.2-201ENST00000365313 147 ntBASIC1.65□□□□□ -2.15
LDB3O75112 RNU6-80P-201ENST00000384195 107 ntBASIC1.65□□□□□ -2.15
LDB3O75112 MIR518F-201ENST00000384973 87 ntBASIC1.65□□□□□ -2.15
LDB3O75112 RNU4-57P-201ENST00000515980 135 ntBASIC1.65□□□□□ -2.15
LDB3O75112 RNA5SP481-201ENST00000516814 122 ntBASIC1.65□□□□□ -2.15
LDB3O75112 SNORA31.17-201ENST00000516953 127 ntBASIC1.65□□□□□ -2.15
LDB3O75112 AC090142.3-201ENST00000519012 385 ntBASIC1.65□□□□□ -2.15
LDB3O75112 AP002004.2-201ENST00000531656 154 ntBASIC1.65□□□□□ -2.15
LDB3O75112 AC103810.8-201ENST00000607347 118 ntBASIC1.65□□□□□ -2.15
LDB3O75112 U7.2-201ENST00000607576 63 ntBASIC1.65□□□□□ -2.15
LDB3O75112 MIR6715A-201ENST00000615929 79 ntBASIC1.65□□□□□ -2.15
LDB3O75112 TUG1_4.1-201ENST00000619464 181 ntBASIC1.65□□□□□ -2.15
LDB3O75112 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
LDB3O75112 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.65□□□□□ -2.15
LDB3O75112 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
LDB3O75112 SNORD48-201ENST00000364953 64 ntBASIC1.64□□□□□ -2.15
LDB3O75112 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
LDB3O75112 Y_RNA.630-201ENST00000411370 108 ntBASIC1.64□□□□□ -2.15
LDB3O75112 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.64□□□□□ -2.15
LDB3O75112 FTH1P12-201ENST00000432137 551 ntBASIC1.64□□□□□ -2.15
LDB3O75112 SNRPGP14-201ENST00000435400 219 ntBASIC1.64□□□□□ -2.15
LDB3O75112 Y_RNA.651-201ENST00000459380 103 ntBASIC1.64□□□□□ -2.15
LDB3O75112 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.64□□□□□ -2.15
LDB3O75112 RNA5SP437-201ENST00000517249 129 ntBASIC1.64□□□□□ -2.15
LDB3O75112 AC131055.1-201ENST00000584626 316 ntBASIC1.64□□□□□ -2.15
LDB3O75112 AL365205.2-201ENST00000594586 68 ntBASIC1.64□□□□□ -2.15
LDB3O75112 MIR8054-201ENST00000620877 86 ntBASIC1.64□□□□□ -2.15
LDB3O75112 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
LDB3O75112 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
LDB3O75112 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.63□□□□□ -2.15
LDB3O75112 ICE2P2-201ENST00000483823 2787 ntBASIC1.63□□□□□ -2.15
LDB3O75112 RNU6-440P-201ENST00000390882 105 ntBASIC1.63□□□□□ -2.15
LDB3O75112 SNORA40.5-201ENST00000391061 128 ntBASIC1.63□□□□□ -2.15
LDB3O75112 SNORD77.3-201ENST00000391113 65 ntBASIC1.63□□□□□ -2.15
LDB3O75112 RN7SKP200-201ENST00000410564 320 ntBASIC1.63□□□□□ -2.15
LDB3O75112 AF228730.3-201ENST00000436691 102 ntBASIC1.63□□□□□ -2.15
LDB3O75112 AC023449.1-201ENST00000454464 154 ntBASIC1.63□□□□□ -2.15
LDB3O75112 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.63□□□□□ -2.15
LDB3O75112 RNU6-693P-201ENST00000516134 107 ntBASIC1.63□□□□□ -2.15
LDB3O75112 RNU6-365P-201ENST00000517113 106 ntBASIC1.63□□□□□ -2.15
LDB3O75112 IGKV1-22-201ENST00000524313 326 ntBASIC1.63□□□□□ -2.15
LDB3O75112 MIR3121-201ENST00000579680 77 ntBASIC1.63□□□□□ -2.15
LDB3O75112 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.63□□□□□ -2.15
LDB3O75112 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
LDB3O75112 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.62□□□□□ -2.15
LDB3O75112 MIRLET7C-201ENST00000362160 84 ntBASIC1.62□□□□□ -2.15
LDB3O75112 RNU6-888P-201ENST00000363010 101 ntBASIC1.62□□□□□ -2.15
LDB3O75112 Y_RNA.120-201ENST00000363304 110 ntBASIC1.62□□□□□ -2.15
LDB3O75112 RNU6-215P-201ENST00000365169 102 ntBASIC1.62□□□□□ -2.15
LDB3O75112 MIR539-201ENST00000365690 78 ntBASIC1.62□□□□□ -2.15
LDB3O75112 RNU6-429P-201ENST00000384582 108 ntBASIC1.62□□□□□ -2.15
LDB3O75112 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
LDB3O75112 RNU6-360P-201ENST00000390944 104 ntBASIC1.62□□□□□ -2.15
LDB3O75112 SNORA26.9-201ENST00000391322 122 ntBASIC1.62□□□□□ -2.15
LDB3O75112 MIR891A-201ENST00000401237 79 ntBASIC1.62□□□□□ -2.15
LDB3O75112 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.62□□□□□ -2.15
LDB3O75112 STAG3L5P-204ENST00000443759 179 ntBASIC1.62□□□□□ -2.15
LDB3O75112 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.62□□□□□ -2.15
LDB3O75112 RNU6-772P-201ENST00000516042 105 ntBASIC1.62□□□□□ -2.15
LDB3O75112 RNU6-781P-201ENST00000516377 101 ntBASIC1.62□□□□□ -2.15
LDB3O75112 RNU7-25P-201ENST00000516544 62 ntBASIC1.62□□□□□ -2.15
LDB3O75112 RNU7-28P-201ENST00000516759 62 ntBASIC1.62□□□□□ -2.15
LDB3O75112 MIR4662B-201ENST00000579498 81 ntBASIC1.62□□□□□ -2.15
LDB3O75112 MIR3618-201ENST00000580330 88 ntBASIC1.62□□□□□ -2.15
LDB3O75112 MIR4762-201ENST00000585261 75 ntBASIC1.62□□□□□ -2.15
LDB3O75112 AC108081.1-201ENST00000604358 221 ntBASIC1.62□□□□□ -2.15
LDB3O75112 MIR7843-201ENST00000622274 79 ntBASIC1.62□□□□□ -2.15
LDB3O75112 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.61□□□□□ -2.15
LDB3O75112 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
LDB3O75112 RNU6-661P-201ENST00000362409 107 ntBASIC1.61□□□□□ -2.15
LDB3O75112 Y_RNA.114-201ENST00000363265 113 ntBASIC1.61□□□□□ -2.15
LDB3O75112 RNU6-268P-201ENST00000364174 107 ntBASIC1.61□□□□□ -2.15
LDB3O75112 U8.5-201ENST00000364528 136 ntBASIC1.61□□□□□ -2.15
LDB3O75112 Y_RNA.353-201ENST00000365440 108 ntBASIC1.61□□□□□ -2.15
LDB3O75112 RNU6-44P-201ENST00000384045 107 ntBASIC1.61□□□□□ -2.15
LDB3O75112 MIR624-201ENST00000385217 97 ntBASIC1.61□□□□□ -2.15
LDB3O75112 RNA5SP127-201ENST00000411051 133 ntBASIC1.61□□□□□ -2.15
LDB3O75112 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.61□□□□□ -2.15
LDB3O75112 snoU13.27-201ENST00000459278 104 ntBASIC1.61□□□□□ -2.15
LDB3O75112 RNU5E-3P-201ENST00000515913 68 ntBASIC1.61□□□□□ -2.15
LDB3O75112 RNA5SP236-201ENST00000516169 116 ntBASIC1.61□□□□□ -2.15
LDB3O75112 SNORA18.4-201ENST00000516440 124 ntBASIC1.61□□□□□ -2.15
LDB3O75112 RNU6-504P-201ENST00000516568 104 ntBASIC1.61□□□□□ -2.15
LDB3O75112 Y_RNA.690-201ENST00000516603 95 ntBASIC1.61□□□□□ -2.15
LDB3O75112 SCARNA15-202ENST00000516881 127 ntBASIC1.61□□□□□ -2.15
LDB3O75112 RNU6-250P-201ENST00000516958 103 ntBASIC1.61□□□□□ -2.15
LDB3O75112 SNORA44.1-201ENST00000517031 108 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms