Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL512326.2-201ENST00000426359 151 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 RNU7-113P-201ENST00000459273 62 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 AC113410.1-201ENST00000505029 247 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 RNA5SP481-201ENST00000516814 122 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 MIR3162-201ENST00000581818 82 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 MALAT1.1-201ENST00000618249 95 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 AC096644.4-201ENST00000563417 2912 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 RNU6-363P-201ENST00000362895 105 ntBASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 RNU4-69P-201ENST00000410677 143 ntBASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 UBBP3-201ENST00000445497 241 ntBASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 HMGN1P18-201ENST00000457642 277 ntBASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 RPL23AP67-201ENST00000465341 474 ntBASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 MIR4694-201ENST00000578534 80 ntBASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 MIR3618-201ENST00000580330 88 ntBASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 AL513423.1-201ENST00000621695 132 ntBASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 MIR203B-201ENST00000636080 86 ntBASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
LIMD1Q9UGP4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 Y_RNA.155-201ENST00000363632 101 ntBASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 RNU6-409P-201ENST00000384114 104 ntBASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 SNORA48.1-201ENST00000390879 135 ntBASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 SNORD77B-201ENST00000391112 67 ntBASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 MIR1283-2-201ENST00000408621 87 ntBASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 RNU6-733P-201ENST00000410759 104 ntBASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 DNAJC19P9-201ENST00000555084 351 ntBASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 AC017071.1-201ENST00000564407 2204 ntBASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.28□□□□□ -1.88
LIMD1Q9UGP4 RNA5SP432-201ENST00000362480 116 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 SNORD115-2-201ENST00000362842 82 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 RNU6-1099P-201ENST00000363533 107 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 SNORD56.5-201ENST00000364281 72 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 SNORD115-20-201ENST00000365099 82 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 RNU6-1067P-201ENST00000384752 107 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 RPS29P29-201ENST00000456396 171 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 RNU7-67P-201ENST00000459003 62 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 SNORA31.4-201ENST00000516049 129 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 ELOCP29-201ENST00000588193 334 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 MAPK10-266ENST00000641066 6555 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 AC009487.2-201ENST00000420969 6821 ntBASIC3.27□□□□□ -1.89
LIMD1Q9UGP4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 RNU4-67P-201ENST00000364569 141 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 Y_RNA.466-201ENST00000384294 113 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 SNORD15B-201ENST00000384714 146 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 MIR518A2-201ENST00000384966 87 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 MIR516B2-201ENST00000385190 85 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 HMGN2P3-201ENST00000433603 273 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 HMGN2P5-201ENST00000436882 273 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 RNU7-34P-201ENST00000459394 64 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 RNA5SP367-201ENST00000516557 118 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 SNORA64.4-201ENST00000516632 81 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 MIR4709-201ENST00000577272 72 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 MIR622-201ENST00000638396 96 ntBASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
LIMD1Q9UGP4 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LIMD1Q9UGP4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.25□□□□□ -1.89
LIMD1Q9UGP4 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
LIMD1Q9UGP4 SNORA24-201ENST00000384096 131 ntBASIC3.25□□□□□ -1.89
LIMD1Q9UGP4 SNORA54-201ENST00000384281 123 ntBASIC3.25□□□□□ -1.89
LIMD1Q9UGP4 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.25□□□□□ -1.89
LIMD1Q9UGP4 SCARNA16.3-201ENST00000516595 184 ntBASIC3.25□□□□□ -1.89
LIMD1Q9UGP4 RNU6-762P-201ENST00000517107 102 ntBASIC3.25□□□□□ -1.89
LIMD1Q9UGP4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 SNORA22.1-201ENST00000362701 134 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 Y_RNA.96-201ENST00000363092 109 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 RNU6-805P-201ENST00000365643 106 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 RN7SKP192-201ENST00000411291 327 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 RNU7-73P-201ENST00000458743 63 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 RPL23AP63-201ENST00000498752 471 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 RN7SKP132-201ENST00000516001 208 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 RNU6-958P-201ENST00000516995 106 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 SUB1P4-201ENST00000566062 339 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 AC064859.1-201ENST00000624741 174 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 AC095038.3-201ENST00000634439 195 ntBASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
LIMD1Q9UGP4 RNA5SP383-201ENST00000362934 120 ntBASIC3.23□□□□□ -1.89
LIMD1Q9UGP4 RNU1-51P-201ENST00000365345 176 ntBASIC3.23□□□□□ -1.89
LIMD1Q9UGP4 Y_RNA.360-201ENST00000365512 102 ntBASIC3.23□□□□□ -1.89
LIMD1Q9UGP4 Y_RNA.430-201ENST00000384081 110 ntBASIC3.23□□□□□ -1.89
LIMD1Q9UGP4 PGBD4P5-201ENST00000445958 426 ntBASIC3.23□□□□□ -1.89
LIMD1Q9UGP4 RNU2-13P-201ENST00000515909 113 ntBASIC3.23□□□□□ -1.89
LIMD1Q9UGP4 RNVU1-2-201ENST00000516326 135 ntBASIC3.23□□□□□ -1.89
LIMD1Q9UGP4 AC104027.1-201ENST00000521887 300 ntBASIC3.23□□□□□ -1.89
LIMD1Q9UGP4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.23□□□□□ -1.89
LIMD1Q9UGP4 U1.36-201ENST00000620684 176 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms