Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 Y_RNA.297-201ENST00000364950 91 ntBASIC1.9□□□□□ -2.11
NUP88Q99567 SNORD38C-201ENST00000384381 69 ntBASIC1.9□□□□□ -2.11
NUP88Q99567 RNU4-70P-201ENST00000384579 139 ntBASIC1.9□□□□□ -2.11
NUP88Q99567 MIR516B2-201ENST00000385190 85 ntBASIC1.9□□□□□ -2.11
NUP88Q99567 AL391903.3-201ENST00000612158 163 ntBASIC1.9□□□□□ -2.11
NUP88Q99567 AP000648.3-201ENST00000623539 4507 ntBASIC1.9□□□□□ -2.11
NUP88Q99567 Y_RNA.7-201ENST00000362352 102 ntBASIC1.89□□□□□ -2.11
NUP88Q99567 SNORD33-201ENST00000362761 85 ntBASIC1.89□□□□□ -2.11
NUP88Q99567 RNU6-103P-201ENST00000363686 107 ntBASIC1.89□□□□□ -2.11
NUP88Q99567 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.89□□□□□ -2.11
NUP88Q99567 SCARNA8-201ENST00000515924 131 ntBASIC1.89□□□□□ -2.11
NUP88Q99567 Y_RNA.797-201ENST00000515977 94 ntBASIC1.89□□□□□ -2.11
NUP88Q99567 RNU6-322P-201ENST00000516010 103 ntBASIC1.89□□□□□ -2.11
NUP88Q99567 FAM106DP-201ENST00000586416 501 ntBASIC1.89□□□□□ -2.11
NUP88Q99567 Z83818.1-201ENST00000603584 150 ntBASIC1.89□□□□□ -2.11
NUP88Q99567 AL365434.2-201ENST00000607979 234 ntBASIC1.89□□□□□ -2.11
NUP88Q99567 Y_RNA.274-201ENST00000364714 101 ntBASIC1.88□□□□□ -2.11
NUP88Q99567 RNU6-1065P-201ENST00000384513 106 ntBASIC1.88□□□□□ -2.11
NUP88Q99567 RNU6-1228P-201ENST00000391014 107 ntBASIC1.88□□□□□ -2.11
NUP88Q99567 Y_RNA.793-201ENST00000411222 111 ntBASIC1.88□□□□□ -2.11
NUP88Q99567 AP1B1P2-201ENST00000416196 106 ntBASIC1.88□□□□□ -2.11
NUP88Q99567 AC092991.1-201ENST00000477176 376 ntBASIC1.88□□□□□ -2.11
NUP88Q99567 SNORD77.4-201ENST00000516158 81 ntBASIC1.88□□□□□ -2.11
NUP88Q99567 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.88□□□□□ -2.11
NUP88Q99567 MIR4662B-201ENST00000579498 81 ntBASIC1.88□□□□□ -2.11
NUP88Q99567 Y_RNA.182-201ENST00000363880 111 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 RNU1-42P-201ENST00000364033 160 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 SNORD1A-201ENST00000364968 72 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 MIR934-201ENST00000401241 83 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 MIR1323-201ENST00000408090 73 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 SNORA79-201ENST00000408376 140 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 RNU2-70P-201ENST00000410718 179 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 SNX2P2-201ENST00000424553 323 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 RNU6-1299P-201ENST00000516316 100 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 RNU6-922P-201ENST00000516753 99 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
NUP88Q99567 MIR4308-201ENST00000580634 81 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 MIR4744-201ENST00000581563 82 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 AC015726.2-201ENST00000620112 122 ntBASIC1.87□□□□□ -2.11
NUP88Q99567 Y_RNA.226-201ENST00000364337 114 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 RNU6-200P-201ENST00000364743 107 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 RNA5SP363-201ENST00000365072 115 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 RNU6-728P-201ENST00000365375 104 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 RNU6-1318P-201ENST00000365389 103 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 Y_RNA.432-201ENST00000384087 111 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 RNY3P5-201ENST00000384127 102 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 Y_RNA.571-201ENST00000384753 98 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 MIR136-201ENST00000385207 82 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 SNORA67.5-201ENST00000391036 107 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 AL451046.2-201ENST00000403074 277 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 RPL31P63-201ENST00000422565 375 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 MTND5P15-201ENST00000434246 349 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 AC015922.2-201ENST00000435593 184 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 AL121914.1-201ENST00000450188 156 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 RNU6-138P-201ENST00000515952 107 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 MIR3671-201ENST00000580455 88 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 MIR4422-201ENST00000581938 83 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 snoU13.31-201ENST00000607291 104 ntBASIC1.86□□□□□ -2.11
NUP88Q99567 SNORA2.2-201ENST00000365473 135 ntBASIC1.85□□□□□ -2.11
NUP88Q99567 AL138752.1-201ENST00000452964 351 ntBASIC1.85□□□□□ -2.11
NUP88Q99567 Y_RNA.644-201ENST00000459006 113 ntBASIC1.85□□□□□ -2.11
NUP88Q99567 RNU7-95P-201ENST00000459222 64 ntBASIC1.85□□□□□ -2.11
NUP88Q99567 Y_RNA.674-201ENST00000516362 113 ntBASIC1.85□□□□□ -2.11
NUP88Q99567 RNU6-126P-201ENST00000516685 103 ntBASIC1.85□□□□□ -2.11
NUP88Q99567 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
NUP88Q99567 RNU6-1138P-201ENST00000365359 106 ntBASIC1.84□□□□□ -2.11
NUP88Q99567 MIR526A1-201ENST00000384897 85 ntBASIC1.84□□□□□ -2.11
NUP88Q99567 SNORA26-201ENST00000391286 122 ntBASIC1.84□□□□□ -2.11
NUP88Q99567 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.84□□□□□ -2.11
NUP88Q99567 RNU6-917P-201ENST00000516294 104 ntBASIC1.84□□□□□ -2.11
NUP88Q99567 AC090142.3-201ENST00000519012 385 ntBASIC1.84□□□□□ -2.11
NUP88Q99567 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
NUP88Q99567 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.84□□□□□ -2.12
NUP88Q99567 MIR302D-201ENST00000362275 68 ntBASIC1.83□□□□□ -2.12
NUP88Q99567 SNORD45.3-201ENST00000363836 72 ntBASIC1.83□□□□□ -2.12
NUP88Q99567 RNU6-268P-201ENST00000364174 107 ntBASIC1.83□□□□□ -2.12
NUP88Q99567 RNU6-60P-201ENST00000364792 103 ntBASIC1.83□□□□□ -2.12
NUP88Q99567 RNU6-47P-201ENST00000383866 107 ntBASIC1.83□□□□□ -2.12
NUP88Q99567 MIR15B-201ENST00000385045 98 ntBASIC1.83□□□□□ -2.12
NUP88Q99567 RNU6-365P-201ENST00000517113 106 ntBASIC1.83□□□□□ -2.12
NUP88Q99567 AC090049.2-201ENST00000550377 109 ntBASIC1.83□□□□□ -2.12
NUP88Q99567 Y_RNA.121-201ENST00000363309 113 ntBASIC1.82□□□□□ -2.12
NUP88Q99567 Y_RNA.486-201ENST00000384398 107 ntBASIC1.82□□□□□ -2.12
NUP88Q99567 RNU6-578P-201ENST00000390980 103 ntBASIC1.82□□□□□ -2.12
NUP88Q99567 Y_RNA.666-201ENST00000516187 112 ntBASIC1.82□□□□□ -2.12
NUP88Q99567 AC109810.1-201ENST00000534066 224 ntBASIC1.82□□□□□ -2.12
NUP88Q99567 AP002392.1-201ENST00000537692 208 ntBASIC1.82□□□□□ -2.12
NUP88Q99567 DNAJC19P9-201ENST00000555084 351 ntBASIC1.82□□□□□ -2.12
NUP88Q99567 SNORD53B-201ENST00000577887 78 ntBASIC1.82□□□□□ -2.12
NUP88Q99567 RNU6-918P-201ENST00000391219 106 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 RNU1-78P-201ENST00000391248 165 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 MIR548O-201ENST00000408583 114 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 RNU6-321P-201ENST00000410912 106 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 RNU2-55P-201ENST00000411146 174 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 RNA5SP445-201ENST00000515889 115 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 SNORA18.7-201ENST00000516910 131 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 MIR4285-201ENST00000581001 85 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 AL513534.2-201ENST00000603836 250 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 AP001485.1-201ENST00000604799 199 ntBASIC1.81□□□□□ -2.12
NUP88Q99567 BX248123.2-201ENST00000606318 124 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 180.1 ms