Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU6-137P-201ENST00000363680 108 ntBASIC-2.95□□□□□ -2.88
VPS13AQ96RL7 Y_RNA.360-201ENST00000365512 102 ntBASIC-2.95□□□□□ -2.88
VPS13AQ96RL7 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-2.95□□□□□ -2.88
VPS13AQ96RL7 AC097510.1-201ENST00000510945 133 ntBASIC-2.95□□□□□ -2.88
VPS13AQ96RL7 AP001282.2-201ENST00000616149 309 ntBASIC-2.95□□□□□ -2.88
VPS13AQ96RL7 AC074290.1-201ENST00000448883 135 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 MIR6888-201ENST00000621977 67 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 MIR649-201ENST00000384843 97 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 Y_RNA.267-201ENST00000364679 109 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 SNORA27.3-201ENST00000364937 134 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 Y_RNA.528-201ENST00000384575 108 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 MIR4460-201ENST00000577862 86 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 AC022441.3-201ENST00000605737 136 ntBASIC-2.96□□□□□ -2.88
VPS13AQ96RL7 RNU6-694P-201ENST00000364071 147 ntBASIC-2.97□□□□□ -2.88
VPS13AQ96RL7 RPL35AP4-201ENST00000412007 102 ntBASIC-2.97□□□□□ -2.88
VPS13AQ96RL7 AL031274.1-201ENST00000450334 232 ntBASIC-2.97□□□□□ -2.89
VPS13AQ96RL7 RNU6-58P-201ENST00000517143 103 ntBASIC-2.97□□□□□ -2.89
VPS13AQ96RL7 RNU6-824P-201ENST00000363724 104 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 Y_RNA.291-201ENST00000364886 113 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 Y_RNA.631-201ENST00000459607 101 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 AC115990.1-201ENST00000526957 301 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 SNORD12C-201ENST00000386307 89 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 CCDC58P2-201ENST00000417131 366 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 AP003400.6-201ENST00000624698 740 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 RNU6-1084P-201ENST00000362498 107 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 RNU6-1290P-201ENST00000362957 109 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 SNORA1.2-201ENST00000365189 134 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 RNU6-437P-201ENST00000459408 95 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 U6.73-201ENST00000619194 103 ntBASIC-2.98□□□□□ -2.89
VPS13AQ96RL7 Y_RNA.394-201ENST00000383942 103 ntBASIC-2.99□□□□□ -2.89
VPS13AQ96RL7 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC-2.99□□□□□ -2.89
VPS13AQ96RL7 AL354751.2-201ENST00000415471 210 ntBASIC-2.99□□□□□ -2.89
VPS13AQ96RL7 MTCO1P57-201ENST00000432182 261 ntBASIC-2.99□□□□□ -2.89
VPS13AQ96RL7 AC022447.4-201ENST00000504053 364 ntBASIC-2.99□□□□□ -2.89
VPS13AQ96RL7 AC104073.3-201ENST00000610942 955 ntBASIC-2.99□□□□□ -2.89
VPS13AQ96RL7 RPL23AP30-201ENST00000432419 501 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 RNU6-416P-201ENST00000516265 103 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 AC026585.1-201ENST00000619582 524 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 Y_RNA.54-201ENST00000362766 105 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 RNU6-1242P-201ENST00000391052 103 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 RNU4-55P-201ENST00000410731 137 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 MTATP6P19-201ENST00000413797 659 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 PSMA6P3-201ENST00000428242 164 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 AC116353.2-201ENST00000505332 712 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 RNU6-488P-201ENST00000515918 99 ntBASIC-3□□□□□ -2.89
VPS13AQ96RL7 RNU6-429P-201ENST00000384582 108 ntBASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 AC117522.1-201ENST00000509821 380 ntBASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 AC137590.2-201ENST00000619709 240 ntBASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 RNU6-1078P-201ENST00000364522 103 ntBASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 SNORD115-31-201ENST00000365318 82 ntBASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 MIR626-201ENST00000385032 94 ntBASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 MTND1P21-201ENST00000412991 285 ntBASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 MIR3923-201ENST00000579521 83 ntBASIC-3.01□□□□□ -2.89
VPS13AQ96RL7 RNU6-563P-201ENST00000364872 108 ntBASIC-3.02□□□□□ -2.89
VPS13AQ96RL7 Y_RNA.381-201ENST00000365666 102 ntBASIC-3.02□□□□□ -2.89
VPS13AQ96RL7 RNY4P13-201ENST00000384284 96 ntBASIC-3.02□□□□□ -2.89
VPS13AQ96RL7 AC104996.3-201ENST00000590718 94 ntBASIC-3.02□□□□□ -2.89
VPS13AQ96RL7 AC079248.2-201ENST00000623779 326 ntBASIC-3.02□□□□□ -2.89
VPS13AQ96RL7 SNORD98-201ENST00000636377 67 ntBASIC-3.02□□□□□ -2.89
VPS13AQ96RL7 RNU6-449P-201ENST00000383914 107 ntBASIC-3.02□□□□□ -2.89
VPS13AQ96RL7 RNU6-1167P-201ENST00000363227 94 ntBASIC-3.02□□□□□ -2.89
VPS13AQ96RL7 Z83846.1-201ENST00000446798 265 ntBASIC-3.02□□□□□ -2.89
VPS13AQ96RL7 RNA5SP201-201ENST00000410316 124 ntBASIC-3.03□□□□□ -2.89
VPS13AQ96RL7 AC009902.1-201ENST00000519351 183 ntBASIC-3.03□□□□□ -2.89
VPS13AQ96RL7 MIR4791-201ENST00000607666 84 ntBASIC-3.03□□□□□ -2.89
VPS13AQ96RL7 RNU6-562P-201ENST00000362731 107 ntBASIC-3.03□□□□□ -2.89
VPS13AQ96RL7 RNU6-1260P-201ENST00000362944 107 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 Y_RNA.179-201ENST00000363844 90 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 AL359634.1-202ENST00000404721 284 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 AC007547.1-201ENST00000462177 490 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 AC110760.3-202ENST00000515177 371 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 SNORD19-201ENST00000391191 68 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 Y_RNA.80-201ENST00000362996 102 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 Y_RNA.353-201ENST00000365440 108 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 SNORD38C-201ENST00000384381 69 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 AC091948.2-201ENST00000636510 279 ntBASIC-3.04□□□□□ -2.9
VPS13AQ96RL7 RNU6-766P-201ENST00000362478 107 ntBASIC-3.05□□□□□ -2.9
VPS13AQ96RL7 FABP5P15-201ENST00000453566 214 ntBASIC-3.05□□□□□ -2.9
VPS13AQ96RL7 snoU109.3-201ENST00000459477 145 ntBASIC-3.05□□□□□ -2.9
VPS13AQ96RL7 RNU6-1240P-201ENST00000365155 104 ntBASIC-3.05□□□□□ -2.9
VPS13AQ96RL7 SNORD51.1-201ENST00000365405 77 ntBASIC-3.05□□□□□ -2.9
VPS13AQ96RL7 RNU6-102P-201ENST00000384485 104 ntBASIC-3.05□□□□□ -2.9
VPS13AQ96RL7 RNU6-1238P-201ENST00000517215 102 ntBASIC-3.05□□□□□ -2.9
VPS13AQ96RL7 RNU2-29P-201ENST00000410423 189 ntBASIC-3.06□□□□□ -2.9
VPS13AQ96RL7 HMGN3P1-201ENST00000453847 193 ntBASIC-3.06□□□□□ -2.9
VPS13AQ96RL7 ZNF321P-202ENST00000550843 495 ntBASIC-3.06□□□□□ -2.9
VPS13AQ96RL7 AL731768.1-201ENST00000603124 139 ntBASIC-3.06□□□□□ -2.9
VPS13AQ96RL7 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC-3.06□□□□□ -2.9
VPS13AQ96RL7 MIR548H5-201ENST00000580314 60 ntBASIC-3.06□□□□□ -2.9
VPS13AQ96RL7 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC-3.06□□□□□ -2.9
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms