Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SNORD28B-201ENST00000390993 75 ntBASIC1□□□□□ -2.25
SKA1Q96BD8 AC005534.2-201ENST00000431047 433 ntBASIC1□□□□□ -2.25
SKA1Q96BD8 RPL39P28-201ENST00000465655 155 ntBASIC1□□□□□ -2.25
SKA1Q96BD8 SCARNA8-201ENST00000515924 131 ntBASIC1□□□□□ -2.25
SKA1Q96BD8 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1□□□□□ -2.25
SKA1Q96BD8 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1□□□□□ -2.25
SKA1Q96BD8 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
SKA1Q96BD8 Y_RNA.128-201ENST00000363391 112 ntBASIC0.99□□□□□ -2.25
SKA1Q96BD8 RNU6-514P-201ENST00000384208 107 ntBASIC0.99□□□□□ -2.25
SKA1Q96BD8 SNORA51.10-201ENST00000384418 136 ntBASIC0.99□□□□□ -2.25
SKA1Q96BD8 RNU6-102P-201ENST00000384485 104 ntBASIC0.99□□□□□ -2.25
SKA1Q96BD8 SNORD72-201ENST00000390994 80 ntBASIC0.99□□□□□ -2.25
SKA1Q96BD8 SNORA53-201ENST00000391141 249 ntBASIC0.99□□□□□ -2.25
SKA1Q96BD8 SNORD111-201ENST00000408139 94 ntBASIC0.99□□□□□ -2.25
SKA1Q96BD8 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.99□□□□□ -2.25
SKA1Q96BD8 PSMC1P5-201ENST00000512850 177 ntBASIC0.99□□□□□ -2.25
SKA1Q96BD8 AC106800.4-201ENST00000614905 153 ntBASIC0.99□□□□□ -2.25
SKA1Q96BD8 RNU4-38P-201ENST00000364472 129 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 MIR532-201ENST00000385025 91 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 RNU6-763P-201ENST00000390865 106 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 Y_RNA.581-201ENST00000391017 97 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 RNU6-994P-201ENST00000410507 111 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 MTCO1P5-201ENST00000433573 344 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 AL392103.1-201ENST00000447000 198 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 U7.7-201ENST00000459276 60 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 MRPS35P2-201ENST00000508242 191 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 AC025627.3-201ENST00000582078 182 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 AL136317.1-201ENST00000612653 226 ntBASIC0.98□□□□□ -2.25
SKA1Q96BD8 Y_RNA.14-201ENST00000362415 103 ntBASIC0.97□□□□□ -2.25
SKA1Q96BD8 RNU6-290P-201ENST00000365212 101 ntBASIC0.97□□□□□ -2.25
SKA1Q96BD8 RNU6-474P-201ENST00000384243 107 ntBASIC0.97□□□□□ -2.25
SKA1Q96BD8 Y_RNA.537-201ENST00000384626 109 ntBASIC0.97□□□□□ -2.25
SKA1Q96BD8 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.97□□□□□ -2.25
SKA1Q96BD8 MIR2115-201ENST00000516657 100 ntBASIC0.97□□□□□ -2.25
SKA1Q96BD8 AC134503.1-201ENST00000633048 54 ntBASIC0.97□□□□□ -2.25
SKA1Q96BD8 MIR6767-201ENST00000637302 66 ntBASIC0.97□□□□□ -2.25
SKA1Q96BD8 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.96□□□□□ -2.26
SKA1Q96BD8 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.96□□□□□ -2.26
SKA1Q96BD8 SNORA25.1-201ENST00000362326 128 ntBASIC0.96□□□□□ -2.26
SKA1Q96BD8 SNORD113.3-201ENST00000364630 78 ntBASIC0.96□□□□□ -2.26
SKA1Q96BD8 Y_RNA.354-201ENST00000365448 111 ntBASIC0.96□□□□□ -2.26
SKA1Q96BD8 MIR598-201ENST00000384868 97 ntBASIC0.96□□□□□ -2.26
SKA1Q96BD8 RNA5SP496-201ENST00000391240 109 ntBASIC0.96□□□□□ -2.26
SKA1Q96BD8 AL603910.2-201ENST00000407268 136 ntBASIC0.96□□□□□ -2.26
SKA1Q96BD8 RNU2-31P-201ENST00000516954 155 ntBASIC0.96□□□□□ -2.26
SKA1Q96BD8 AC036111.3-201ENST00000526389 112 ntBASIC0.96□□□□□ -2.26
SKA1Q96BD8 AC013791.1-201ENST00000616619 62 ntBASIC0.96□□□□□ -2.26
SKA1Q96BD8 MIR367-201ENST00000362299 68 ntBASIC0.95□□□□□ -2.26
SKA1Q96BD8 RNU5E-4P-201ENST00000364931 120 ntBASIC0.95□□□□□ -2.26
SKA1Q96BD8 RNU6-396P-201ENST00000365369 105 ntBASIC0.95□□□□□ -2.26
SKA1Q96BD8 RNU7-181P-201ENST00000517234 74 ntBASIC0.95□□□□□ -2.26
SKA1Q96BD8 MIR6516-201ENST00000630554 81 ntBASIC0.95□□□□□ -2.26
SKA1Q96BD8 Y_RNA.152-201ENST00000363578 100 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 RNU6-867P-201ENST00000364956 107 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 RNU6-326P-201ENST00000365480 107 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 SNORD89-201ENST00000390981 114 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 RNU6-847P-201ENST00000411115 108 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 RNU6-1143P-201ENST00000516125 104 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 RNU6-1110P-201ENST00000516462 101 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 MIR5000-201ENST00000577717 103 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 MIR4653-201ENST00000585107 83 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 AL353765.1-201ENST00000605514 183 ntBASIC0.94□□□□□ -2.26
SKA1Q96BD8 Y_RNA.276-201ENST00000364732 109 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 MIR570-201ENST00000384917 97 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 MIR1302-7-201ENST00000408841 72 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 RNU6-613P-201ENST00000410412 108 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 AC107297.1-201ENST00000459991 176 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 RNY3P15-201ENST00000516297 97 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.93□□□□□ -2.26
SKA1Q96BD8 MIR5692C2-201ENST00000577959 77 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 MIR4724-201ENST00000579485 89 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 AL355297.3-201ENST00000604082 446 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 MIR4791-201ENST00000607666 84 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 RNU6-94P-201ENST00000607728 107 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 uc_338.4-201ENST00000616635 176 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 AC022140.2-201ENST00000623500 188 ntBASIC0.93□□□□□ -2.26
SKA1Q96BD8 RNU6-1272P-201ENST00000362776 107 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 Y_RNA.158-201ENST00000363651 101 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 RNU6-770P-201ENST00000363929 105 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 Y_RNA.455-201ENST00000384230 98 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 SNORA2B-201ENST00000384583 137 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 MIR548P-201ENST00000408336 84 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 AL035398.1-201ENST00000430869 322 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.92□□□□□ -2.26
SKA1Q96BD8 AC113410.1-201ENST00000505029 247 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 RNU4-57P-201ENST00000515980 135 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 7SK.10-201ENST00000621414 298 ntBASIC0.92□□□□□ -2.26
SKA1Q96BD8 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.92□□□□□ -2.26
SKA1Q96BD8 Y_RNA.61-201ENST00000362835 102 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 RNU6-654P-201ENST00000364373 107 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 SNORA22B-201ENST00000383876 138 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 RNU6-342P-201ENST00000384521 104 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 Y_RNA.535-201ENST00000384612 99 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 RNU6-121P-201ENST00000410525 99 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 Y_RNA.637-201ENST00000459424 114 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 RNU7-149P-201ENST00000516739 59 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 AC131281.1-201ENST00000522984 164 ntBASIC0.91□□□□□ -2.26
SKA1Q96BD8 CYP3A137P-201ENST00000562436 69 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 160.3 ms