Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.19□□□□□ -2.06
COL4A3Q01955 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL4A3Q01955 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL4A3Q01955 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL4A3Q01955 RNU6-1298P-201ENST00000362456 101 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 RNU6-147P-201ENST00000383983 107 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 RNU6-160P-201ENST00000384591 107 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 RNU6-1072P-201ENST00000384703 107 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 RNU6-443P-201ENST00000384780 107 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 RNA5SP181-201ENST00000410246 98 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.18□□□□□ -2.06
COL4A3Q01955 Y_RNA.651-201ENST00000459380 103 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.18□□□□□ -2.06
COL4A3Q01955 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.18□□□□□ -2.06
COL4A3Q01955 MIR3616-201ENST00000584070 92 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 SNRPGP19-201ENST00000603826 189 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 AL353149.1-201ENST00000610667 244 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 AL591926.4-201ENST00000616895 298 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 MIR219B-201ENST00000637023 88 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.18□□□□□ -2.06
COL4A3Q01955 AC008555.8-201ENST00000623602 2168 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
COL4A3Q01955 Y_RNA.43-201ENST00000362670 111 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 Y_RNA.99-201ENST00000363138 105 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 SNORA25B-201ENST00000365507 128 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 Y_RNA.528-201ENST00000384575 108 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 MIR522-201ENST00000385071 87 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 MIRLET7F2-201ENST00000385277 83 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
COL4A3Q01955 MIR1276-201ENST00000408707 83 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 TRIAP1P1-201ENST00000427062 225 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 SNRPGP13-201ENST00000442212 177 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 RNU1-131P-201ENST00000458943 161 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 Y_RNA.649-201ENST00000459077 103 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 SNORD13-201ENST00000459299 104 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 RNA5SP236-201ENST00000516169 116 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 RNU6-113P-201ENST00000516653 101 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 RNA5SP170-201ENST00000517150 101 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 SNORA50A-202ENST00000629536 136 ntBASIC2.18□□□□□ -2.06
COL4A3Q01955 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
COL4A3Q01955 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL4A3Q01955 SNORA1B-201ENST00000362535 133 ntBASIC2.17□□□□□ -2.06
COL4A3Q01955 RNU6-862P-201ENST00000362804 105 ntBASIC2.17□□□□□ -2.06
COL4A3Q01955 RNA5SP125-201ENST00000364843 120 ntBASIC2.17□□□□□ -2.06
COL4A3Q01955 SNORD24-201ENST00000383884 75 ntBASIC2.17□□□□□ -2.06
COL4A3Q01955 SNORD77.3-201ENST00000391113 65 ntBASIC2.17□□□□□ -2.06
COL4A3Q01955 AC024995.1-201ENST00000523014 93 ntBASIC2.17□□□□□ -2.06
COL4A3Q01955 AP002004.2-201ENST00000531656 154 ntBASIC2.17□□□□□ -2.06
COL4A3Q01955 AC134878.1-201ENST00000619901 243 ntBASIC2.17□□□□□ -2.06
COL4A3Q01955 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.17□□□□□ -2.06
COL4A3Q01955 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.17□□□□□ -2.06
COL4A3Q01955 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL4A3Q01955 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL4A3Q01955 SNORD68-201ENST00000363214 84 ntBASIC2.16□□□□□ -2.06
COL4A3Q01955 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.16□□□□□ -2.06
COL4A3Q01955 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.16□□□□□ -2.06
COL4A3Q01955 AC087685.1-201ENST00000587507 141 ntBASIC2.16□□□□□ -2.06
COL4A3Q01955 AL449363.1-201ENST00000617815 186 ntBASIC2.16□□□□□ -2.06
COL4A3Q01955 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
COL4A3Q01955 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.16□□□□□ -2.06
COL4A3Q01955 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
COL4A3Q01955 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.16□□□□□ -2.06
COL4A3Q01955 ICE2P2-201ENST00000483823 2787 ntBASIC2.15□□□□□ -2.06
COL4A3Q01955 Y_RNA.410-201ENST00000383992 113 ntBASIC2.15□□□□□ -2.06
COL4A3Q01955 MIR515-2-201ENST00000384883 83 ntBASIC2.15□□□□□ -2.06
COL4A3Q01955 MIR515-1-201ENST00000384884 83 ntBASIC2.15□□□□□ -2.06
COL4A3Q01955 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.15□□□□□ -2.06
COL4A3Q01955 RNA5SP136-201ENST00000410906 107 ntBASIC2.15□□□□□ -2.06
COL4A3Q01955 AL137067.1-201ENST00000615933 120 ntBASIC2.15□□□□□ -2.06
COL4A3Q01955 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL4A3Q01955 RNU6-1255P-201ENST00000363434 112 ntBASIC2.15□□□□□ -2.07
COL4A3Q01955 Y_RNA.191-201ENST00000363972 113 ntBASIC2.15□□□□□ -2.07
COL4A3Q01955 RNU6-442P-201ENST00000383968 104 ntBASIC2.15□□□□□ -2.07
COL4A3Q01955 MIR548A2-201ENST00000384956 97 ntBASIC2.15□□□□□ -2.07
COL4A3Q01955 MIR1262-201ENST00000408276 93 ntBASIC2.15□□□□□ -2.07
COL4A3Q01955 RNA5SP89-201ENST00000410300 108 ntBASIC2.15□□□□□ -2.07
COL4A3Q01955 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.15□□□□□ -2.07
COL4A3Q01955 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.15□□□□□ -2.07
COL4A3Q01955 RNU6-412P-201ENST00000516434 106 ntBASIC2.15□□□□□ -2.07
COL4A3Q01955 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL4A3Q01955 RNU6-457P-201ENST00000363999 107 ntBASIC2.14□□□□□ -2.07
COL4A3Q01955 RNA5SP493-201ENST00000364115 91 ntBASIC2.14□□□□□ -2.07
COL4A3Q01955 MIR802-201ENST00000390235 94 ntBASIC2.14□□□□□ -2.07
COL4A3Q01955 SNORA48.3-201ENST00000391081 134 ntBASIC2.14□□□□□ -2.07
COL4A3Q01955 CST2P1-201ENST00000425770 87 ntBASIC2.14□□□□□ -2.07
COL4A3Q01955 AL445687.1-201ENST00000439946 251 ntBASIC2.14□□□□□ -2.07
COL4A3Q01955 SCARNA15-202ENST00000516881 127 ntBASIC2.14□□□□□ -2.07
COL4A3Q01955 AC006441.5-201ENST00000612680 209 ntBASIC2.14□□□□□ -2.07
COL4A3Q01955 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.14□□□□□ -2.07
COL4A3Q01955 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.14□□□□□ -2.07
COL4A3Q01955 RNU6-461P-201ENST00000364195 107 ntBASIC2.13□□□□□ -2.07
COL4A3Q01955 SNORA40.18-201ENST00000391200 128 ntBASIC2.13□□□□□ -2.07
COL4A3Q01955 AL445646.1-201ENST00000431784 216 ntBASIC2.13□□□□□ -2.07
COL4A3Q01955 AC099677.2-201ENST00000436385 175 ntBASIC2.13□□□□□ -2.07
COL4A3Q01955 RNU6-168P-201ENST00000516189 101 ntBASIC2.13□□□□□ -2.07
COL4A3Q01955 RNU6-1149P-201ENST00000516810 97 ntBASIC2.13□□□□□ -2.07
COL4A3Q01955 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.13□□□□□ -2.07
COL4A3Q01955 MIR6504-201ENST00000613520 61 ntBASIC2.13□□□□□ -2.07
COL4A3Q01955 snoU2-30.1-201ENST00000365012 70 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 193.9 ms