Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 MT-TT-201ENST00000387460 66 ntBASIC1.62□□□□□ -2.15
CLCN3P51790 RNU6-1228P-201ENST00000391014 107 ntBASIC1.62□□□□□ -2.15
CLCN3P51790 RNU4-43P-201ENST00000410628 137 ntBASIC1.62□□□□□ -2.15
CLCN3P51790 RNU6-321P-201ENST00000410912 106 ntBASIC1.62□□□□□ -2.15
CLCN3P51790 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.62□□□□□ -2.15
CLCN3P51790 AC009474.2-201ENST00000451383 136 ntBASIC1.62□□□□□ -2.15
CLCN3P51790 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.62□□□□□ -2.15
CLCN3P51790 Y_RNA.676-201ENST00000516393 96 ntBASIC1.62□□□□□ -2.15
CLCN3P51790 RNU1-92P-201ENST00000517017 135 ntBASIC1.62□□□□□ -2.15
CLCN3P51790 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.62□□□□□ -2.15
CLCN3P51790 ZNF209P-201ENST00000593450 2304 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 RNU6-312P-201ENST00000364629 107 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 Y_RNA.267-201ENST00000364679 109 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 Y_RNA.270-201ENST00000364693 104 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 RNU6-1062P-201ENST00000383908 107 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 RNU6-484P-201ENST00000384016 107 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 RNU4-70P-201ENST00000384579 139 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 RNU6-394P-201ENST00000410735 107 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 RNU6-1135P-201ENST00000411083 103 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 AC004965.1-201ENST00000413033 213 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 RPL30P13-201ENST00000418873 348 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 AC245047.8-201ENST00000456455 284 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 AL049830.1-201ENST00000468034 425 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 HMGN1P7-201ENST00000491722 313 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 OR9P1P-201ENST00000496431 281 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 AC005840.1-201ENST00000498412 377 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 SNORD77.4-201ENST00000516158 81 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 AC109810.1-201ENST00000534066 224 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.61□□□□□ -2.15
CLCN3P51790 MIR2681-201ENST00000581814 105 ntBASIC1.61□□□□□ -2.15
CLCN3P51790 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
CLCN3P51790 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
CLCN3P51790 MIRLET7C-201ENST00000362160 84 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 SNORD33-201ENST00000362761 85 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 RNU4-41P-201ENST00000364426 143 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 Y_RNA.265-201ENST00000364677 108 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 RNU6-1138P-201ENST00000365359 106 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 RNU6-203P-201ENST00000384038 104 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 MIR522-201ENST00000385071 87 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.6□□□□□ -2.15
CLCN3P51790 RNU6-561P-201ENST00000516222 102 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 AL160236.1-201ENST00000556317 195 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 AC015688.6-201ENST00000577737 104 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 MIR4421-201ENST00000578133 69 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 AC097639.2-201ENST00000603159 172 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 AL591926.4-201ENST00000616895 298 ntBASIC1.6□□□□□ -2.15
CLCN3P51790 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.6□□□□□ -2.15
CLCN3P51790 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.6□□□□□ -2.15
CLCN3P51790 MIR302D-201ENST00000362275 68 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 SNORA7.1-201ENST00000363750 139 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 Y_RNA.182-201ENST00000363880 111 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.59□□□□□ -2.15
CLCN3P51790 AL606845.1-201ENST00000404881 255 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 RNU2-55P-201ENST00000411146 174 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.59□□□□□ -2.15
CLCN3P51790 STAG3L5P-204ENST00000443759 179 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 SNRPGP8-201ENST00000454064 226 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 Y_RNA.662-201ENST00000516028 97 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.59□□□□□ -2.15
CLCN3P51790 RPL23AP91-201ENST00000569211 455 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 MIR4422-201ENST00000581938 83 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 MIR4781-201ENST00000585250 76 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 uc_338.4-201ENST00000616635 176 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 AC095038.3-201ENST00000634439 195 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 ICE2P2-201ENST00000483823 2787 ntBASIC1.59□□□□□ -2.15
CLCN3P51790 RNU4-84P-201ENST00000364200 139 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 MIR320A-201ENST00000385302 82 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 RNU1-78P-201ENST00000391248 165 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.58□□□□□ -2.16
CLCN3P51790 AC233266.1-201ENST00000454518 96 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 AC023790.1-201ENST00000482174 347 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 TRMT112P2-201ENST00000512910 132 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 RNU7-121P-201ENST00000516604 62 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 RNU6-255P-201ENST00000516957 105 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 MIR4431-201ENST00000579990 94 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 AC008507.4-201ENST00000585464 127 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 AC242852.1-201ENST00000612151 96 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 AC244015.1-201ENST00000622301 99 ntBASIC1.58□□□□□ -2.16
CLCN3P51790 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CLCN3P51790 SNORD45.3-201ENST00000363836 72 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 MIR660-201ENST00000385235 97 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 Y_RNA.580-201ENST00000391004 95 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 SNRPGP10-201ENST00000432323 225 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 SNRPGP14-201ENST00000435400 219 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 AC245517.4-201ENST00000448601 281 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 AC005908.1-201ENST00000468701 347 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 Y_RNA.797-201ENST00000515977 94 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 RNU6-1007P-201ENST00000516586 107 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 AC087685.1-201ENST00000587507 141 ntBASIC1.57□□□□□ -2.16
CLCN3P51790 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.57□□□□□ -2.16
CLCN3P51790 RNU6-424P-201ENST00000384367 105 ntBASIC1.56□□□□□ -2.16
CLCN3P51790 SEPT7P4-201ENST00000437076 306 ntBASIC1.56□□□□□ -2.16
CLCN3P51790 HSPE1P24-201ENST00000450782 238 ntBASIC1.56□□□□□ -2.16
CLCN3P51790 AL049861.1-201ENST00000603130 150 ntBASIC1.56□□□□□ -2.16
CLCN3P51790 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
CLCN3P51790 Y_RNA.272-201ENST00000364696 102 ntBASIC1.55□□□□□ -2.16
CLCN3P51790 RNU6-728P-201ENST00000365375 104 ntBASIC1.55□□□□□ -2.16
CLCN3P51790 MIR15B-201ENST00000385045 98 ntBASIC1.55□□□□□ -2.16
CLCN3P51790 MIR513A1-201ENST00000385138 129 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms