Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SEPT7P4-201ENST00000437076 306 ntBASIC1.78□□□□□ -2.12
CIITAP33076 STAG3L5P-204ENST00000443759 179 ntBASIC1.78□□□□□ -2.12
CIITAP33076 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.78□□□□□ -2.12
CIITAP33076 RNU7-149P-201ENST00000516739 59 ntBASIC1.78□□□□□ -2.12
CIITAP33076 RNU7-28P-201ENST00000516759 62 ntBASIC1.78□□□□□ -2.12
CIITAP33076 RNU6-1116P-201ENST00000517269 99 ntBASIC1.78□□□□□ -2.12
CIITAP33076 MIR4781-201ENST00000585250 76 ntBASIC1.78□□□□□ -2.12
CIITAP33076 AC008507.4-201ENST00000585464 127 ntBASIC1.78□□□□□ -2.12
CIITAP33076 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.78□□□□□ -2.12
CIITAP33076 SNORD68-201ENST00000363214 84 ntBASIC1.77□□□□□ -2.13
CIITAP33076 Y_RNA.265-201ENST00000364677 108 ntBASIC1.77□□□□□ -2.13
CIITAP33076 RNU6-1138P-201ENST00000365359 106 ntBASIC1.77□□□□□ -2.13
CIITAP33076 Y_RNA.464-201ENST00000384282 110 ntBASIC1.77□□□□□ -2.13
CIITAP33076 RNU6-360P-201ENST00000390944 104 ntBASIC1.77□□□□□ -2.13
CIITAP33076 SNORD72-201ENST00000390994 80 ntBASIC1.77□□□□□ -2.13
CIITAP33076 Y_RNA.622-201ENST00000411091 108 ntBASIC1.77□□□□□ -2.13
CIITAP33076 MLLT10P1-201ENST00000418346 262 ntBASIC1.77□□□□□ -2.13
CIITAP33076 RNU6-255P-201ENST00000516957 105 ntBASIC1.77□□□□□ -2.13
CIITAP33076 RNU6-1212P-201ENST00000517023 104 ntBASIC1.77□□□□□ -2.13
CIITAP33076 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.77□□□□□ -2.13
CIITAP33076 AC021506.2-201ENST00000612354 169 ntBASIC1.77□□□□□ -2.13
CIITAP33076 JPX_2.1-201ENST00000614161 69 ntBASIC1.77□□□□□ -2.13
CIITAP33076 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CIITAP33076 RNU4-84P-201ENST00000364200 139 ntBASIC1.76□□□□□ -2.13
CIITAP33076 RNA5SP363-201ENST00000365072 115 ntBASIC1.76□□□□□ -2.13
CIITAP33076 Y_RNA.486-201ENST00000384398 107 ntBASIC1.76□□□□□ -2.13
CIITAP33076 MIR15B-201ENST00000385045 98 ntBASIC1.76□□□□□ -2.13
CIITAP33076 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
CIITAP33076 U8.16-201ENST00000391279 133 ntBASIC1.76□□□□□ -2.13
CIITAP33076 RN7SKP200-201ENST00000410564 320 ntBASIC1.76□□□□□ -2.13
CIITAP33076 RNU2-55P-201ENST00000411146 174 ntBASIC1.76□□□□□ -2.13
CIITAP33076 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.76□□□□□ -2.13
CIITAP33076 CALM2P4-201ENST00000430810 426 ntBASIC1.76□□□□□ -2.13
CIITAP33076 SNRPGP14-201ENST00000435400 219 ntBASIC1.76□□□□□ -2.13
CIITAP33076 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.76□□□□□ -2.13
CIITAP33076 snoU13.27-201ENST00000459278 104 ntBASIC1.76□□□□□ -2.13
CIITAP33076 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.76□□□□□ -2.13
CIITAP33076 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.76□□□□□ -2.13
CIITAP33076 MIR4431-201ENST00000579990 94 ntBASIC1.76□□□□□ -2.13
CIITAP33076 MIR4303-201ENST00000581299 66 ntBASIC1.76□□□□□ -2.13
CIITAP33076 snoU13.31-201ENST00000607291 104 ntBASIC1.76□□□□□ -2.13
CIITAP33076 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
CIITAP33076 RNY1P10-201ENST00000363268 113 ntBASIC1.75□□□□□ -2.13
CIITAP33076 Y_RNA.118-201ENST00000363300 101 ntBASIC1.75□□□□□ -2.13
CIITAP33076 RNU6-60P-201ENST00000364792 103 ntBASIC1.75□□□□□ -2.13
CIITAP33076 RNU6-728P-201ENST00000365375 104 ntBASIC1.75□□□□□ -2.13
CIITAP33076 RNU6-424P-201ENST00000384367 105 ntBASIC1.75□□□□□ -2.13
CIITAP33076 MIR517C-201ENST00000385103 95 ntBASIC1.75□□□□□ -2.13
CIITAP33076 RNU6-131P-201ENST00000391144 107 ntBASIC1.75□□□□□ -2.13
CIITAP33076 AL121914.1-201ENST00000450188 156 ntBASIC1.75□□□□□ -2.13
CIITAP33076 RNA5SP168-201ENST00000516642 112 ntBASIC1.75□□□□□ -2.13
CIITAP33076 AC021753.1-201ENST00000635724 168 ntBASIC1.75□□□□□ -2.13
CIITAP33076 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
CIITAP33076 Y_RNA.91-201ENST00000363042 107 ntBASIC1.74□□□□□ -2.13
CIITAP33076 RNU6-1062P-201ENST00000383908 107 ntBASIC1.74□□□□□ -2.13
CIITAP33076 RNU6-203P-201ENST00000384038 104 ntBASIC1.74□□□□□ -2.13
CIITAP33076 RNU6-804P-201ENST00000384286 107 ntBASIC1.74□□□□□ -2.13
CIITAP33076 Y_RNA.508-201ENST00000384502 114 ntBASIC1.74□□□□□ -2.13
CIITAP33076 MIR1267-201ENST00000408723 78 ntBASIC1.74□□□□□ -2.13
CIITAP33076 snoU13.9-201ENST00000458927 103 ntBASIC1.74□□□□□ -2.13
CIITAP33076 RNU7-121P-201ENST00000516604 62 ntBASIC1.74□□□□□ -2.13
CIITAP33076 AC097639.2-201ENST00000603159 172 ntBASIC1.74□□□□□ -2.13
CIITAP33076 BX248123.2-201ENST00000606318 124 ntBASIC1.74□□□□□ -2.13
CIITAP33076 SNORA28-201ENST00000606769 126 ntBASIC1.74□□□□□ -2.13
CIITAP33076 AC104465.1-201ENST00000611365 139 ntBASIC1.74□□□□□ -2.13
CIITAP33076 Pinc.1-201ENST00000616452 154 ntBASIC1.74□□□□□ -2.13
CIITAP33076 AC095038.3-201ENST00000634439 195 ntBASIC1.74□□□□□ -2.13
CIITAP33076 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CIITAP33076 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
CIITAP33076 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.73□□□□□ -2.13
CIITAP33076 Y_RNA.66-201ENST00000362862 102 ntBASIC1.73□□□□□ -2.13
CIITAP33076 Y_RNA.272-201ENST00000364696 102 ntBASIC1.73□□□□□ -2.13
CIITAP33076 RNU6-818P-201ENST00000364837 108 ntBASIC1.73□□□□□ -2.13
CIITAP33076 RNU6-439P-201ENST00000384188 106 ntBASIC1.73□□□□□ -2.13
CIITAP33076 MIR194-1-201ENST00000384892 85 ntBASIC1.73□□□□□ -2.13
CIITAP33076 AL034345.1-201ENST00000407768 123 ntBASIC1.73□□□□□ -2.13
CIITAP33076 MIR1323-201ENST00000408090 73 ntBASIC1.73□□□□□ -2.13
CIITAP33076 AL161935.2-201ENST00000414627 60 ntBASIC1.73□□□□□ -2.13
CIITAP33076 AC108667.1-201ENST00000428618 249 ntBASIC1.73□□□□□ -2.13
CIITAP33076 AC005840.1-201ENST00000498412 377 ntBASIC1.73□□□□□ -2.13
CIITAP33076 SNORD45.4-201ENST00000516629 73 ntBASIC1.73□□□□□ -2.13
CIITAP33076 MTND5P41-201ENST00000517498 206 ntBASIC1.73□□□□□ -2.13
CIITAP33076 AL160236.1-201ENST00000556317 195 ntBASIC1.73□□□□□ -2.13
CIITAP33076 MIR4709-201ENST00000577272 72 ntBASIC1.73□□□□□ -2.13
CIITAP33076 SNORD53B-201ENST00000577887 78 ntBASIC1.73□□□□□ -2.13
CIITAP33076 MIR3144-201ENST00000579460 79 ntBASIC1.73□□□□□ -2.13
CIITAP33076 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.73□□□□□ -2.13
CIITAP33076 AL645939.4-201ENST00000604495 135 ntBASIC1.73□□□□□ -2.13
CIITAP33076 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.72□□□□□ -2.13
CIITAP33076 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.72□□□□□ -2.13
CIITAP33076 MIR378A-201ENST00000362177 66 ntBASIC1.72□□□□□ -2.13
CIITAP33076 Y_RNA.170-201ENST00000363746 110 ntBASIC1.72□□□□□ -2.13
CIITAP33076 Y_RNA.634-201ENST00000364811 113 ntBASIC1.72□□□□□ -2.13
CIITAP33076 RNU6-1130P-201ENST00000365434 107 ntBASIC1.72□□□□□ -2.13
CIITAP33076 RNU6-643P-201ENST00000384018 107 ntBASIC1.72□□□□□ -2.13
CIITAP33076 Y_RNA.432-201ENST00000384087 111 ntBASIC1.72□□□□□ -2.13
CIITAP33076 RNU6-950P-201ENST00000384651 107 ntBASIC1.72□□□□□ -2.13
CIITAP33076 Y_RNA.580-201ENST00000391004 95 ntBASIC1.72□□□□□ -2.13
CIITAP33076 AC114811.1-201ENST00000507207 168 ntBASIC1.72□□□□□ -2.13
CIITAP33076 RNU6-1299P-201ENST00000516316 100 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms