Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MIR4299-201ENST00000577899 72 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 TUG1_4.1-201ENST00000619464 181 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
HOXD9P28356 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HOXD9P28356 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HOXD9P28356 RNA5SP99-201ENST00000364020 114 ntBASIC1.88□□□□□ -2.11
HOXD9P28356 SNORA20-201ENST00000384662 132 ntBASIC1.88□□□□□ -2.11
HOXD9P28356 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
HOXD9P28356 SNORA12.1-201ENST00000390873 148 ntBASIC1.88□□□□□ -2.11
HOXD9P28356 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.88□□□□□ -2.11
HOXD9P28356 RNU6-504P-201ENST00000516568 104 ntBASIC1.88□□□□□ -2.11
HOXD9P28356 RNU2-56P-201ENST00000516826 190 ntBASIC1.88□□□□□ -2.11
HOXD9P28356 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXD9P28356 AL365205.2-201ENST00000594586 68 ntBASIC1.88□□□□□ -2.11
HOXD9P28356 AC069114.2-201ENST00000604699 304 ntBASIC1.88□□□□□ -2.11
HOXD9P28356 AL627230.6-201ENST00000611129 280 ntBASIC1.88□□□□□ -2.11
HOXD9P28356 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.88□□□□□ -2.11
HOXD9P28356 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
HOXD9P28356 SNORD24-201ENST00000383884 75 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 RNU6-1168P-201ENST00000390831 104 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 SNORD72-201ENST00000390994 80 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 RNU6-460P-201ENST00000391158 108 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 RNA5SP482-201ENST00000391269 118 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 RNU2-51P-201ENST00000410708 197 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 AC245047.3-201ENST00000429428 127 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 AC069257.2-201ENST00000441819 155 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXD9P28356 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 AC090142.3-201ENST00000519012 385 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 AC084768.2-201ENST00000622736 221 ntBASIC1.87□□□□□ -2.11
HOXD9P28356 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
HOXD9P28356 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
HOXD9P28356 RNU6-888P-201ENST00000363010 101 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 RNA5SP109-201ENST00000391010 116 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 RNU6-482P-201ENST00000391068 107 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 Y_RNA.584-201ENST00000391090 114 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 AC244636.1-201ENST00000421152 228 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXD9P28356 RNU6-971P-201ENST00000516920 106 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 AP001328.1-201ENST00000528550 176 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 AC007751.1-201ENST00000529260 376 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.86□□□□□ -2.11
HOXD9P28356 MIR3935-201ENST00000583472 104 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 AC131055.1-201ENST00000584626 316 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 MIR8054-201ENST00000620877 86 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.86□□□□□ -2.11
HOXD9P28356 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
HOXD9P28356 AL359851.1-201ENST00000569460 4997 ntBASIC1.86□□□□□ -2.11
HOXD9P28356 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
HOXD9P28356 Y_RNA.218-201ENST00000364218 104 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 SNORA63D-201ENST00000364359 132 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 SNORA16.1-201ENST00000364597 132 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 SNORD50B-201ENST00000364995 70 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 RNU6-1336P-201ENST00000383886 109 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 MIR624-201ENST00000385217 97 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
HOXD9P28356 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
HOXD9P28356 MIR676-201ENST00000390702 67 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 SNORA48.1-201ENST00000390879 135 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 RNU6-440P-201ENST00000390882 105 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 MLLT10P1-201ENST00000418346 262 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 AC008267.6-201ENST00000441664 139 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 RNU6-313P-201ENST00000516317 112 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 U7.2-201ENST00000607576 63 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 AC006441.5-201ENST00000612680 209 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 AL353997.5-201ENST00000618886 171 ntBASIC1.85□□□□□ -2.11
HOXD9P28356 Y_RNA.120-201ENST00000363304 110 ntBASIC1.84□□□□□ -2.11
HOXD9P28356 RNU6-1292P-201ENST00000383856 107 ntBASIC1.84□□□□□ -2.11
HOXD9P28356 SNORD61-201ENST00000384252 73 ntBASIC1.84□□□□□ -2.11
HOXD9P28356 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.84□□□□□ -2.11
HOXD9P28356 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.84□□□□□ -2.11
HOXD9P28356 HMGN2P19-201ENST00000425149 265 ntBASIC1.84□□□□□ -2.11
HOXD9P28356 RNVU1-2-201ENST00000516326 135 ntBASIC1.84□□□□□ -2.11
HOXD9P28356 SUB1P4-201ENST00000566062 339 ntBASIC1.84□□□□□ -2.11
HOXD9P28356 MIR5094-201ENST00000578766 85 ntBASIC1.84□□□□□ -2.11
HOXD9P28356 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.84□□□□□ -2.11
HOXD9P28356 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.84□□□□□ -2.11
HOXD9P28356 AL365222.1-201ENST00000614661 98 ntBASIC1.84□□□□□ -2.11
HOXD9P28356 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
HOXD9P28356 Y_RNA.71-201ENST00000362892 104 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 RNU1-17P-201ENST00000363022 152 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 SNORD68-201ENST00000363214 84 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 Y_RNA.127-201ENST00000363386 109 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 Y_RNA.265-201ENST00000364677 108 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 RNU6-915P-201ENST00000364943 103 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 RNU6-80P-201ENST00000384195 107 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 SNORA22C-201ENST00000384614 134 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 MIR548A2-201ENST00000384956 97 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 RNU6-1154P-201ENST00000391001 104 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 RNA5SP127-201ENST00000411051 133 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 SNRPGP14-201ENST00000435400 219 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 RNU6-1211P-201ENST00000459179 105 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 Y_RNA.666-201ENST00000516187 112 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 SNORA31.10-201ENST00000516482 106 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 MIR514B-201ENST00000516774 80 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 RNU6-250P-201ENST00000516958 103 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.83□□□□□ -2.12
HOXD9P28356 SNORA28-201ENST00000606769 126 ntBASIC1.83□□□□□ -2.12
HOXD9P28356 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 187.1 ms