Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 MIR3179-4-201ENST00000617599 84 ntBASIC-1.51□□□□□ -2.65
HMGN4O00479 MTND5P18-201ENST00000445624 1801 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 Y_RNA.172-201ENST00000363765 102 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 RNU4-92P-201ENST00000363783 136 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 SNORD115-30-201ENST00000364117 82 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 SNORD114-29-201ENST00000364819 70 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 RNU5E-5P-201ENST00000365379 116 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 SNORA69-201ENST00000383895 132 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 RNU6-157P-201ENST00000383957 107 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 AL603910.2-201ENST00000407268 136 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 RNU6-1001P-201ENST00000411265 100 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 SNORD57-201ENST00000448188 72 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-1.52□□□□□ -2.65
HMGN4O00479 Y_RNA.637-201ENST00000459424 114 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC-1.52□□□□□ -2.65
HMGN4O00479 RNU6-175P-201ENST00000516896 107 ntBASIC-1.52□□□□□ -2.65
HMGN4O00479 Y_RNA.203-201ENST00000364106 102 ntBASIC-1.53□□□□□ -2.65
HMGN4O00479 Y_RNA.242-201ENST00000364473 110 ntBASIC-1.53□□□□□ -2.65
HMGN4O00479 Y_RNA.547-201ENST00000384654 119 ntBASIC-1.53□□□□□ -2.65
HMGN4O00479 SNORD72-201ENST00000390994 80 ntBASIC-1.53□□□□□ -2.65
HMGN4O00479 RNU7-180P-201ENST00000459240 63 ntBASIC-1.53□□□□□ -2.65
HMGN4O00479 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC-1.53□□□□□ -2.65
HMGN4O00479 MTCO2P30-201ENST00000503662 364 ntBASIC-1.53□□□□□ -2.65
HMGN4O00479 RNU6-1007P-201ENST00000516586 107 ntBASIC-1.53□□□□□ -2.65
HMGN4O00479 RNU6-1012P-201ENST00000516606 109 ntBASIC-1.53□□□□□ -2.65
HMGN4O00479 uc_338.10-201ENST00000621872 182 ntBASIC-1.53□□□□□ -2.65
HMGN4O00479 RNU4-32P-201ENST00000363404 141 ntBASIC-1.54□□□□□ -2.66
HMGN4O00479 RNU6-702P-201ENST00000364982 107 ntBASIC-1.54□□□□□ -2.66
HMGN4O00479 SNORD115-44-201ENST00000365391 82 ntBASIC-1.54□□□□□ -2.66
HMGN4O00479 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.54□□□□□ -2.66
HMGN4O00479 MIR518B-201ENST00000385127 83 ntBASIC-1.54□□□□□ -2.66
HMGN4O00479 RNU6-1190P-201ENST00000410811 104 ntBASIC-1.54□□□□□ -2.66
HMGN4O00479 SCARNA18B-201ENST00000458806 135 ntBASIC-1.54□□□□□ -2.66
HMGN4O00479 CCDC34P1-201ENST00000507441 517 ntBASIC-1.54□□□□□ -2.66
HMGN4O00479 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.54□□□□□ -2.66
HMGN4O00479 RNU6-1209P-201ENST00000363655 107 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 RNU6-214P-201ENST00000384130 107 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 RNU6-1145P-201ENST00000384246 107 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 RNY3P9-201ENST00000384727 106 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 RPL30P15-201ENST00000457129 321 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 RNU6-189P-201ENST00000516120 101 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 RNU7-25P-201ENST00000516544 62 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 OSBPL9P5-201ENST00000542581 171 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 AC140658.3-201ENST00000567603 271 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 POLR3GP2-201ENST00000588366 668 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 AL357078.3-201ENST00000607528 618 ntBASIC-1.55□□□□□ -2.66
HMGN4O00479 Y_RNA.167-201ENST00000363735 109 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 MIR539-201ENST00000365690 78 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 RNU6-456P-201ENST00000384493 107 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 SNORA40.5-201ENST00000391061 128 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 AL603914.1-201ENST00000401964 204 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 RNU4-55P-201ENST00000410731 137 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 RNU6-625P-201ENST00000459412 107 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 RNU7-175P-201ENST00000515915 61 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 MTND4P7-201ENST00000523876 130 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 AC141846.1-201ENST00000568348 142 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 AC124312.5-201ENST00000604451 268 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 AL158050.2-201ENST00000605336 568 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 AC103705.1-201ENST00000619013 241 ntBASIC-1.56□□□□□ -2.66
HMGN4O00479 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 RNU6-517P-201ENST00000384362 110 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 RNU6-192P-201ENST00000391253 100 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 RNA5SP261-201ENST00000410536 106 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 AC074085.1-201ENST00000413598 418 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 USP9YP16-201ENST00000430287 407 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC-1.57□□□□□ -2.66
HMGN4O00479 MTND3P23-201ENST00000431980 347 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC-1.57□□□□□ -2.66
HMGN4O00479 USP9YP23-201ENST00000455085 407 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 MIR4473-201ENST00000583731 91 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 MIR5692C1-201ENST00000585309 91 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 AC006927.3-201ENST00000638789 384 ntBASIC-1.57□□□□□ -2.66
HMGN4O00479 Y_RNA.142-201ENST00000363491 102 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 RNU4-68P-201ENST00000364314 141 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 RNU6-949P-201ENST00000384040 107 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 RNU6-1310P-201ENST00000384153 107 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 RNU6-1257P-201ENST00000384625 110 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 Y_RNA.598-201ENST00000410480 95 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 CEP57L1P1-201ENST00000430943 1201 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 RPS29P24-201ENST00000486345 171 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.58□□□□□ -2.66
HMGN4O00479 DEFB131E-201ENST00000532329 154 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 MIR3682-201ENST00000581338 84 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 AC018714.1-201ENST00000605028 208 ntBASIC-1.58□□□□□ -2.66
HMGN4O00479 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-1.58□□□□□ -2.66
HMGN4O00479 RNY4P34-201ENST00000364779 95 ntBASIC-1.59□□□□□ -2.66
HMGN4O00479 RNU6-1323P-201ENST00000384025 107 ntBASIC-1.59□□□□□ -2.66
HMGN4O00479 MIR517B-201ENST00000385102 67 ntBASIC-1.59□□□□□ -2.66
HMGN4O00479 AL031003.1-201ENST00000404229 172 ntBASIC-1.59□□□□□ -2.66
HMGN4O00479 MIR548I3-201ENST00000408378 149 ntBASIC-1.59□□□□□ -2.66
HMGN4O00479 RNU2-61P-201ENST00000411069 191 ntBASIC-1.59□□□□□ -2.66
HMGN4O00479 CHEK2P4-201ENST00000450340 246 ntBASIC-1.59□□□□□ -2.66
HMGN4O00479 AC073534.2-201ENST00000620377 381 ntBASIC-1.59□□□□□ -2.66
HMGN4O00479 MIR4320-201ENST00000636981 65 ntBASIC-1.59□□□□□ -2.66
HMGN4O00479 Y_RNA.56-201ENST00000362798 112 ntBASIC-1.6□□□□□ -2.67
HMGN4O00479 RNU4-58P-201ENST00000363192 141 ntBASIC-1.6□□□□□ -2.67
HMGN4O00479 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.6□□□□□ -2.67
HMGN4O00479 RNU6-1200P-201ENST00000384162 107 ntBASIC-1.6□□□□□ -2.67
HMGN4O00479 SNORA27-201ENST00000384323 126 ntBASIC-1.6□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms